BAC Information

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BAC

Clone NameMSMg01-111F10
Chromosome11 (Build37)
Map Location 106,314,314 - 106,314,581
singlet/doubletsinglet
Overlap geneErn1
Upstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2
Downstream geneLOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111F10.T7 (MSMg01no111_f10.b1)MSMg01-111F10.TJ (MSMg01no111_f10.g1)
ACCAG324032AG324033
length1,1841,082
length of high quality
(start - end)
646 (75 - 720)268 (57 - 324)
definitionCHROMAT_FILE: MSMg01no111_f10.b1 PHD_FILE: MSMg01no111_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:31 2005CHROMAT_FILE: MSMg01no111_f10.g1 PHD_FILE: MSMg01no111_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGAGCATTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCCCGTGGTAGTGCCGTTACACATCTTTAATCCCAGCACTCGGGAGGC
AGAGGCCGGTGGATCTCTGAGTTTAAAAGCAGCCTGATCCACAGAGTGAG
TTCAAGGACAGCCAGGCAACACAGAAACCCTGCCTTGAAAGCCCTGCAGC
TACTTCAGTTGGCATTTACTTTAGTGATGAGAAACCGGAAGATTCTCTAC
CGAAAGCCACAACCAAAGCAAAGGCGGCTCCTCACTTCTTCTCAACAACC
TGACCGAATGGTTTACCTTTGCAATAAGACAAGACAAGGAAATAAAATAG
AACAATTGGGAAGGATGAAAATACAACTGAGCCGGGCGTGGTGGCGCACG
CCTTGGATCCCAGCACTCAGGAGGCAGAGGCAGACAGATTTCTGAGTTCG
AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAG
AGAAACCCTGTCTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAAGACAAGACAACTGTCCTGTTGACAGGTGA
CAAAGTCAGAACTGACCAAAAGATTCTAAGAACTGGAAACAACCACAGAA
AAGCCGCTGGATACAAGCTTAACACAAGTAGATGTCTGGGCTACAAAGAC
CTTGGTCACTCGCCCCTCCTAAGTCCCAGGACACCCCAGTCTATCTGCTG
GACGCTGGTTTCCTCTGAAATCAAGCCCATCTACCACAAAATGAGTATCT
TGCGATGCTAAACATGCCAAACGATTGGCCCAACACAGCTCAGGATAGTC
TCCAAACCCCAGATGCTTTCCCCTACCTTCTAGAACCCTTCCTTTTTGGA
AAAGGTTCATATCCTTTTCCTGANTGGGGGGGGTTGTCTTCCCAAAATCC
ACAAATTCATTCCTTCCCCAGTAACCCTGCAATCCCTCCCTGTGGGTCTC
CAACTTATCCCCCCGTTTACTCGTGGGAATATAAATCTCCCTGGTAATAA
ACTTGTCTTTGTGTAATTTTTCCCCAGGGTCGGGAAATGTCCCTCTTTGG
TAAACTTTATCTATATCCCTTCTTTATATAAACA
CGCCTAAAAAGCCCGNNNTTTACCANCAAACTGAAGNTCTTCCTTAATAA
TATCTGGGACTCATTTCATGGNTTCCTGTTTACTTTTTTTAGGAGCTAAA
AACCTACAAATATTTCCCCCCATATCCACAGTTTTTTGGCAGGTACAGTT
GCTCTCAATTAAACACATGTTGCTATTCCTAAAAATTTAAAGACAGACTT
ATACAACCACATGAATTTCCTATTCTGGATGGGCGCTTCTTTCTGAACCT
TTTCCTATGTTGAGAGTCGTGCAACAATGCTCTCTGCTATCCTCTTACTG
CTCAGCTGGCCATCAGGTCCTGTTGTTTTTTTTCAGGAAGCACCTTCCAA
ATCTGACTGTCACTCCTCTCAGTCTCCAGGTCACAGCCAGCCTTGTGGCA
TCTACCTCCTAGATTCATGCGGCAGTCTGCTGACCACTGTCCGGATTCCC
CACGTTCTCTTGCTTGTAATAGCCTCCCATTTGCCTGTCATACTGCCATT
AGATTCACACACACACACCCTTCAAGGGACATTGTGCTGCCTCCAGTGCT
TGCCACCGATATCCATGCGGAGAGTGTGCCACCTGTGCACAAAGAGAGGA
AACCTATTGCTGCTACCCTCAATGTGGTCGTTTCATTTTTGGACCCTGTA
CCACAGCTAGTCTGAAAGGACTGGCTCATGTGGTCAGGTTTTATTTTTTA
TTACGCCTGTGAGACCCATCAGTCTGAACACTCACATTCTCTAGCCTCAC
TCCTTTGACTGTCTCAGAACTCCTTACTATGTCTCAACTCTTTTGCCCTT
ATGTTCTATAGTAGATGGCTTTGAAAGTGATATAGACTTACTTGTCGGCG
AAACTCCTTGAAACCCCATATTAAGTATATCTAATTTATAAATTTCCAAA
CCTTGTACCTTAAATATAAGGTTGCTCTAAAAACTTATGTTCATCCTCTT
CTTTCTTAACCTAATTGTCAAAGTGAAAGTCCCTTCCCTCATGGTGGTCT
TTTTAAATTTTTTTCTTGGCATTTGAATGAAAGTCCTTTCCATCTGTATG
TGGGTAGTTTTTGCCTTTTTTTGTCCTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_f10.g1 MSMg01no111_f10.g1 CHROMAT_FILE:
MSMg01no111_f10.g1 PHD_FILE: MSMg01no111_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:31 2005
         (268 letters)



>mm_chr11_106314114_106314781
          Length = 668

 Score =  489 bits (253), Expect = e-143
 Identities = 264/268 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggactcatttcatggnttcctgtttactttttttaggagctaaaaacctacaaatatttc 60
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggactcatttcattgtttcctgtttactttttttaggagctaaaaacctacaaatatttc 409

                                                                       
Query: 61  cccccatatccacagttttttggcaggtacagttgctctcaattaaacacatgttgctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cccccatatccacagttttttggcaggtacagttgctctcaattaaacacatgttgctat 349

                                                                       
Query: 121 tcctaaaaatttaaagacagacttatacaaccacatgaatttcctattctggatgggcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcctaaaaatttaaagacagacttatacaaccacatgaatttcctattctggatgggcgc 289

                                                                       
Query: 181 ttctttctgaaccttttcctatgttgagagtcgtgcaacaatgctctctgctatcctctt 240
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttctttctgaacctttttctatgctgagagtcgtgcaacaatgctctctgctatcctctt 229

                                       
Query: 241 actgctcagctggccatcaggtcctgtt 268
           ||||||||||||||||||||||||||||
Sbjct: 228 actgctcagctggccatcaggtcctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)