Query= MSMg01no111_h04.b1 MSMg01no111_h04.b1 CHROMAT_FILE:
MSMg01no111_h04.b1 PHD_FILE: MSMg01no111_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:47 2005
(673 letters)
>mm_chr11_86736830_86737904
Length = 1075
Score = 1139 bits (589), Expect = 0.0
Identities = 620/631 (98%), Gaps = 4/631 (0%)
Strand = Plus / Minus
Query: 1 ccagatgcttgcagaaggcaactgctttcccatctaaggagtggagcacctcaggaggtc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 630 ccagatgcttgcagaaggcaactgctttcccagctaaggagtggagcacctcaggaggtc 571
Query: 61 caggagcaagcccttttggactttgaaattctccagattttattgccagtcacaaatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caggagcaagcccttttggactttgaaattctccagattttattgccagtcacaaatgta 511
Query: 121 cttacactgcacactaccatgtgagttcttctgggtcataccggtctctgagagggtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cttacactgcacactaccatgtgagttcttctgggtcataccggtctctgagagggtctg 451
Query: 181 gcttctcttgagcagtttgcacatctgttccacacaccaccatgtgagttcttctgggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcttctcttgagcagtttgcacatctgttccacacaccaccatgtgagttcttctgggtc 391
Query: 241 ataccagtctccgagagagtctggcttctcttaagagtttgcacatctgttccattgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ataccagtctccgagagagtctggcttctcttaagagtttgcacatctgttccattgtat 331
Query: 301 tgtcagcaacgtcagcctcctggggatcttacagccacagggcagag--gccatttggac 358
|||||||||| ||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 330 tgtcagcaacatcagcctcctggggatcttacagccacagggtagagaggtcatttggac 271
Query: 359 aggctcttcccttgagggtgtaggtaacccatgatgtgtgtctggcagtaaaaggctatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aggctcttcccttgagggtgtaggtaacccatgatgtgtgtctggcagtaaaaggctatt 211
Query: 419 gttctgttagtgagacagggtctcactgtacagcctaggctggcccaggctggcctcaaa 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 210 gttctgttagtgagacagggtctcactgtgcagcctaggctggcccaggctggcctcaaa 151
Query: 479 ctcacaaatctccagcttttagtttcccaggtgctgggattataaacatgaggcactgca 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ctcacaaatctcctgcttttagtttcccaggtgctgggattataaacatgaggcactgca 91
Query: 539 cctggttttggagcagattatataaccttgatgtaaggaccaagacatccacatttcccc 598
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cctggctttggagcagattatataaccttgatgtaaggaccaagacatccacatttcccc 31
Query: 599 atcccagccatcttttcaa-cctttcagcca 628
||||||||||||||| ||| |||||||||||
Sbjct: 30 atcccagccatcttt-caaacctttcagcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space: 706095
Effective search space used: 706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_h04.g1 MSMg01no111_h04.g1 CHROMAT_FILE:
MSMg01no111_h04.g1 PHD_FILE: MSMg01no111_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:47 2005
(553 letters)
>mm_chr11_86569775_86570727
Length = 953
Score = 1054 bits (545), Expect = 0.0
Identities = 548/549 (99%)
Strand = Plus / Plus
Query: 1 ctaaattccaaaaggccataaataacctctaaataactctccctacctgcaagaatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaattccaaaaggccataaataacctctaaataactctccctacctgcaagaatcaaa 260
Query: 61 gtgagcctaagagctacactaaccctctgaagaaaccaagaaaggaaaaatatgcgcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagcctaagagctacactaaccctctgaagaaaccaagaaaggaaaaatatgcgcgtt 320
Query: 121 ccccttgggaccttgaccccaggcaccgagactgacaccgccccttgccgcccctctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccttgggaccttgaccccaggcaccgagactgacaccgccccttgccgcccctctatc 380
Query: 181 ttctttctgttccttcagtgagtgtgaccttcggttccttatagattcagggaaggcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttctgttccttcagtgagtgtgaccttcggttccttatagattcagggaaggcaag 440
Query: 241 ccacgagccactgctaccctaaccccaaggtgcctttctcagtggtgagctgcagaggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacgagccactgctaccctaaccccaaggtgcctttctcagtggtgagctgcagaggga 500
Query: 301 ggatgcagctcctccccaacccacccgccacacaattcctgggtgcagactcgatgtaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgcagctcctccccaacccacccgccacacaattcctgggtgcagactcgatgtaga 560
Query: 361 aatgggaatagaccaagggaaggtgacagccccgcgtcgctcggggttaacgagaaatct 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 aatgggaatagaccaagggaaggtgacagccccgcgtcgctcagggttaacgagaaatct 620
Query: 421 tgctctgggagaaacgcgcgagaagctcccccacctagcccctacccaaatgaatgaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctctgggagaaacgcgcgagaagctcccccacctagcccctacccaaatgaatgaact 680
Query: 481 gagtaaaatgggaaggggggtctggtatgcgcagttcttgcaatccaggaagcagaataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtaaaatgggaaggggggtctggtatgcgcagttcttgcaatccaggaagcagaataa 740
Query: 541 gaggtcgtc 549
|||||||||
Sbjct: 741 gaggtcgtc 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
