Query= MSMg01no111_m05.b1 MSMg01no111_m05.b1 CHROMAT_FILE:
MSMg01no111_m05.b1 PHD_FILE: MSMg01no111_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:30 2005
(678 letters)
>mm_chr11_91646102_91647178
Length = 1077
Score = 482 bits (249), Expect = e-140
Identities = 407/533 (76%), Gaps = 114/533 (21%)
Strand = Plus / Minus
Query: 149 tttaaggtgataaatcataaaattaactgcactcattattaaacacatctgtgaataacc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tttaaggtgataaatcataaaattaactgcactcattattaaacacatctgtgaataacc 1018
Query: 209 aaaaataatcacaagaattgcccattttatgtggacgaattgtgtggtatgtgaattagt 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 aaaaataatcccaagaattgcccattttatgtggacgaattgtgtggtatgtgaattagt 958
Query: 269 tctaaataaaactatctcttaaggaactgatgtttgaaactcacaacttaaagaataagt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tctaaataaaactatctcttaaggaactgatgtttgaaactcacaacttaaagaataagt 898
Query: 329 ttaatataatgtaatataatataatataatataatataatataatataatataatataat 388
||||||||||
Sbjct: 897 ttaatataat-------------------------------------------------- 888
Query: 389 ataatataatataatataatataatataatataatataatataatataatataatataat 448
|||||
Sbjct: 887 -------------------------------------------------------ataat 883
Query: 449 ataatataatataatataatatgtagttccatgtgcagtagtaagaatgaggacaggagt 508
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct: 882 ataatataatataatataatatgtatttccatatgcagtagtaagaatgaggacagaagt 823
Query: 509 acattccaggactatgtgtagaagctgcatcacaggctattcttatccagtagcaactca 568
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 822 acatttcaggactatgtgtaggagctgcatcacaggctattcttacccagtagcaactca 763
Query: 569 cagaaaataaagtagtgccagatgcatgaaatatgaaatcaaaatatccaggttagaaac 628
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 762 cagaaaataaagtagtgctggatgcatgaaatatgaattcaaaatatccaggtcagaaac 703
Query: 629 atgtatgcttaaaggaaatatttttcacagca------tcctgatattttcca 675
|||| ||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 702 atgtttgcttaaaggaaatatttt-caca--aatattttcctgatattttcca 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_m05.g1 MSMg01no111_m05.g1 CHROMAT_FILE:
MSMg01no111_m05.g1 PHD_FILE: MSMg01no111_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:30 2005
(698 letters)
>mm_chr11_91560578_91561675
Length = 1098
Score = 1265 bits (654), Expect = 0.0
Identities = 684/698 (97%), Gaps = 8/698 (1%)
Strand = Plus / Plus
Query: 1 ggggaccttgaaacaaaaactaaatcactaacgataattggtgagtgagaacagccatta 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ggggaccttgaaacaaaaactaaatcactaaagataattggtgagtgagaacagccatta 260
Query: 61 ggaaatgaagcttacaagcagaacctacaaattaattccatttgtttctagaccaaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaatgaagcttacaagcagaacctacaaattaattccatttgtttctagaccaaggtc 320
Query: 121 aagttttatgtttggcaattgattttaaaggtggttgttggatataggtgtataaactcc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aagttttatgtttggcaattgattttaaaggtgattgttggatataggtgtataaactcc 380
Query: 181 taagcttttattctctcactctattggtttttacaagaatgactcgcggccatagggcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagcttttattctctcactctattggtttttacaagaatgactcgcggccatagggcaa 440
Query: 241 acactcatgttttataatgtcttttgaggcttatgattgtgcactttgtatagctgtaac 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactcatgttttataaagtcttttgaggcttatgattgtgcactttgtatagctgtaac 500
Query: 301 cacaataatgataataaagtagctaactgtgtgctgaacactgcatgcataataactcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaataatgataataaagtagctaactgtgtgctgaacactgcatgcataataactcat 560
Query: 361 ttaatcctcaatcctgctcaatcctctaaggcaggtaccttatcaactccagtaaagatg 420
||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaat--t------tgctcaatcctctaaggcaggtaccttatcaactccagtaaagatg 612
Query: 421 ccatttcctcaaggttgtacagctatttggaaatcaagtcaggtagtttctgagaggtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccatttcctcaaggttgtacagctatttggaaatcaagtcaggtagtttctgagaggtca 672
Query: 481 gcaattcaggaaaaggaaggctctggatgtgtgcatgtaatgagacgtgatgtaagagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 673 gcaattcaggaaaaggaaggctctggatgtgtgcatgtaatgagacgtgatgtaacagaa 732
Query: 541 ggataactggacctaagacatgggtagcagtgttttagggagacaagaggcaagaacttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggataactggacctaagacatgggtagcagtgttttagggagacaagaggcaagaacttt 792
Query: 601 agcatcaagtatctggtcagaatgctttgcctgcaactgcttaatagttgtgatgggaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 agcatcaagtatctggtcagaatgctttgcctgcaactgcttaatagttgtgatgggaag 852
Query: 661 cgggttccagaagctgctgtttagaattaccaacatga 698
|||||||||||||||||| ||||||||||||||||||
Sbjct: 853 agggttccagaagctgctgcttagaattaccaacatga 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
