BAC Information

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BAC

Clone NameMSMg01-112A09
Chromosome11 (Build37)
Map Location 89,519,538 - 89,519,700
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112A09.T7 (MSMg01no112_a09.b1)MSMg01-112A09.TJ (MSMg01no112_a09.g1)
ACCAG324545AG324546
length760727
length of high quality
(start - end)
95 (63 - 157)164 (76 - 239)
definitionCHROMAT_FILE: MSMg01no112_a09.b1 PHD_FILE: MSMg01no112_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:03 2005CHROMAT_FILE: MSMg01no112_a09.g1 PHD_FILE: MSMg01no112_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTG
CCTATCCGAATAACCTACAACTTTATCTCTCTTAAACGTTATGGAGTCCT
GCACAACCATTGAGCAGGTCACAGATGGGCTTCTTCCCACGCATAGCTCT
GAAAGCAGAATTAGCTCTGAAAGTTTCACGTTGAAAACACTCATATAAAG
TTGGGGATCTTTTTGCATGTTTCACCCGTTCCTTTCCTCAATTGTCATAG
CTGTTTATTTTGTCGTTGCAAACTGGAACTCAGGTGGGTGGGAAGACATA
ATTGAACGAAACACTTTATAGGTATTCTCAGGCATAACACACATCCAGAA
TAACGTACAAATCACAATTATTCATCTCAGTCTGTATCTTCTTAAACATA
GGATGACTACCCATCATCTCTGTCATAAATAGAGCTTCATTAGATATCCT
AATAGATCTCCTTGTGCCTTTGTCAATCACTGTGCACTTGCTTTTCTTCC
CTAATATGAGTTTTCTCGATTTCTAACCCCAGACTTCATTATGCGTGTTT
TTGCGTGTTTTCCCTCCCCCTTTTTTCCCCCTCCCTTTTTCTTTCCTTTC
TCTCTTTTTCTTTTTTTCGCTCCCTACTTTATCTTTCCCCTTTTTCTCTT
TTTCCCCCTTTCTTTTTTTCTCCCCTCTCTTCTTTTTTTCCTTTTTCCCT
CTTCCCCACCTTTTTTTTTTCTTTTCCGCCCTTTCTCCTTTTCGCCATTT
CTCTCCTCCN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGTCTCAGGTGATTCCTAGGCATA
TAATTGCAGTCAGGATCTGGACATTTTTACTTAGTAAGCTATGCATCTGA
ACAGCCAGTACACATGTGTACCTGTAACTAAATGCACGCTGAAGAGGTGG
AGGCACTTACAGAGCAAAGAGATTCCTCTGCCGGGTGATACTCTCATGCA
CCACCTCCGAGTCTGACTGTTGTAACAAACCACATCGTTTCCTTAATACA
AAGACAGAAACAGCTCCGAGTTCATTCAACTTTCAGCCTCTTCCTACGAA
ATGAGCTGCTAAGGACTGGCCTGCTGACAGCACACTATAGATCGCATACT
ATGATAGATTTGTCATGACCCAAACCTCAGTTGGCGTCTTAGAAAGTACA
CACATCCCGAACACAGTCTTCTCCCGAAGTCCATGAATATGTACATTAAC
ATGTATTGCACAGCACCCGTCTTTCACTGTTTCCTGCTACAGGCCTGATC
TTTATTGCCCGAATCTATCATTTCCTCATGTTGCTTCTTCCACGCGCACA
GACTACTTGAACAACCCACAATCTTCAATGACCAACTGTGATTCAACCCT
CATCTACATCCCACCCTACTCTTTGGTGTCCTGGCTCTTATATACCCTCT
CACAATATTTCCAGAACCTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_a09.g1 MSMg01no112_a09.g1 CHROMAT_FILE:
MSMg01no112_a09.g1 PHD_FILE: MSMg01no112_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:03 2005
         (164 letters)



>mm_chr11_89519338_89519901
          Length = 564

 Score =  300 bits (155), Expect = 3e-86
 Identities = 161/163 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtctcaggtgattcctaggcatataattgcagtcaggatctggacatttttacttagt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtgtctcaggtgattcctaggcatataattgcagtcaggatctggatatttttacttagt 260

                                                                       
Query: 61  aagctatgcatctgaacagccagtacacatgtgtacctgtaactaaatgcacgctgaaga 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aagctatgcatctgaacagccagtacagatgtgtacctgtaactaaatgcacgctgaaga 320

                                                      
Query: 121 ggtggaggcacttacagagcaaagagattcctctgccgggtga 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtggaggcacttacagagcaaagagattcctctgccgggtga 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)