BAC Information

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BAC

Clone NameMSMg01-112D05
Chromosome11 (Build37)
Map Location 21,945,298 - 21,945,625
singlet/doubletsinglet
Overlap geneEhbp1
Upstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1
Downstream geneLOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112D05.T7 (MSMg01no112_d05.b1)MSMg01-112D05.TJ (MSMg01no112_d05.g1)
ACCAG324674AG324675
length719715
length of high quality
(start - end)
370 (46 - 415)328 (76 - 403)
definitionCHROMAT_FILE: MSMg01no112_d05.b1 PHD_FILE: MSMg01no112_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:17 2005CHROMAT_FILE: MSMg01no112_d05.g1 PHD_FILE: MSMg01no112_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGAAAATGACCGCACAACATACCCAAACTTATAGGACATGATG
AAAGCTGTGCTAAGAGAAAATTTCATAGCACTAAATGGCTACATTAAAAA
AAATAAAATAAAAAGCGATAACATAGTAGAAATATTGTAGCACAACTGAA
AATGCTAGAGCAGTGTTTCTCAACATGTGGGTTGCAAGCCATTGGGAGGT
CAAAAGACCCTTTCTCAAGGGCTGCCCAAGACCATCGGAAAACACACTTA
CATGACCAATTCATAACAGTACAAATACTAATACAAATACATCAAACAAA
GAATTGGCTCTTTGAGAAAATGAACAAGATAGATAAACCCTTATCCAAAC
TATTTAGTCAGGCAGAGAGAACATCCAAATTAACACAATCAGAAATGAAG
AGGGAGACATAAAACAGACACTAAGGAAATCTAAAGAATCCAGAGGACAT
ACTTTAAAATCTGTACTTCACTCAATTGGAAAATCTAAGAAAGGAATAAT
TTTCTCAATAGGTACCACTTACAAAAGTTAACTCAAGATCAGATAAACAA
TTTAAATAGCACTATAATCCCTAAGGAAATAGAAGCAGTCATGAATAACA
TCTCCCATTTGTCCCCGCCCAAAACATCCAAGACCAGATCCATACCATTT
GGTTTTAGTGAACAATTAA
CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGTAATTGGGGTGGTTAATTTTA
TTTACACAGAGCCGTTCACAGCGCATTAAATAATAGAGATAATTGAACAA
GAATTGTCAAGTGTGTACTGATATCAGACATATTACAGAAGGGAATGTGC
ATAAAACTTCATTTCTATGCAGCCATTGTTTATGGTAATTAAGTACACAG
ATTTATCCCTTGGTTGCCTTCCAAGCTTATGGCAACCGCTATTGTTGTGC
TCCATTAATATGTAATCAGGAAATAGTTTAATTTTCTAATCTGCAGTTTG
AGAATTCACTTTCTAACAACTCTTAATTACTGCATTGCCCTAATGATGTT
CATGGTTATGAAAATTGAACCCCTAAACTCTGTGCAAGAAGTCACAGGGT
ATTATAATTCCAGAGGCGGCGCTCTCTTATTAAACTTGTTACGTCTTCTC
CATACGTAGCCCAGTGTCCTTCACAAGACATTTATTTTTGCATTTTACAA
TTCGCCTCTCCCATGTACCGAGTTAAAACATTTATTATCCATAACTCATC
CCTCTGTTTATGAGAAGTGATAGAATGTTACCCCAGCGCCTTCGAAGCCT
CTCACTCTCTCTTGAATTCCCTCACCGCCACCCAACATGTTTTTATTGTC
TGACCCTGAAGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_d05.g1 MSMg01no112_d05.g1 CHROMAT_FILE:
MSMg01no112_d05.g1 PHD_FILE: MSMg01no112_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:17 2005
         (328 letters)



>mm_chr11_21945098_21945825
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtaattggggtggttaattttatttacacagagccgttcacagcgcattaaataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaagtaattggggtggttaattttatttacacagagccgttcacagcgcattaaataata 469

                                                                       
Query: 61  gagataattgaacaagaattgtcaagtgtgtactgatatcagacatattacagaagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gagataattgaacaagaattgtcaagtgtgtactgatatcagacatattacagaagggaa 409

                                                                       
Query: 121 tgtgcataaaacttcatttctatgcagccattgtttatggtaattaagtacacagattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtgcataaaacttcatttctatgcagccattgtttatggtaattaagtacacagattta 349

                                                                       
Query: 181 tcccttggttgccttccaagcttatggcaaccgctattgttgtgctccattaatatgtaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 348 tcccttggttgccttccaagcttatggcaactgctattgttgtgctccattaatatgtaa 289

                                                                       
Query: 241 tcaggaaatagtttaattttctaatctgcagtttgagaattcactttctaacaactctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaggaaatagtttaattttctaatctgcagtttgagaattcactttctaacaactctta 229

                                       
Query: 301 attactgcattgccctaatgatgttcat 328
           ||||||||||||||||||||||| ||||
Sbjct: 228 attactgcattgccctaatgatgctcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)