BAC Information

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BAC

Clone NameMSMg01-112F14
Chromosome11 (Build37)
Map Location 20,998,105 - 20,998,474
singlet/doubletsinglet
Overlap genePeli1
Upstream geneActr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream geneVps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112F14.T7 (MSMg01no112_f14.b1)MSMg01-112F14.TJ (MSMg01no112_f14.g1)
ACCAG324783AG324784
length884747
length of high quality
(start - end)
139 (73 - 211)370 (76 - 445)
definitionCHROMAT_FILE: MSMg01no112_f14.b1 PHD_FILE: MSMg01no112_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:29 2005CHROMAT_FILE: MSMg01no112_f14.g1 PHD_FILE: MSMg01no112_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCG
GAATTCTTTAGCTTAGACGATGGTGGCTCATGCCTGTAATCCTAGCATTT
AAAAGAGAGAAACTGGAGGATTGTTGTATGTTTGAGGCTACATTGTAAGA
TTCTGTCTCATAAAAAAAAAAAAAAAGAAGAAGAAAAGGAAGGAAGGAAG
GAAGGAAGGAACGAAGGATTGTACTTTCTTTTCCTCCCTTTTTCCCCCTT
TTCCCTCTTTCCTCTTCCTATTTCATTTCCTCTTTCATCTCCCTTCTCTT
TTCCTTTCCACTCTATCCTTCCCGCTATTTTTTTTTTTTCTCCCTTTTTC
CATTCTCCTCTTTCTCTTCCCTTCTTTTTTTCCCCCCCCCCTCCTTCTCT
CCCTTTTATTCCCTCCTTTCTCCCTTTCTCTCCTTTTCCCCCCCTATTTC
TTTCTTTTTTTCCCCTTCTCTTTCCTTGTCTTCCTCTCCTTTTATTAATC
CCCGCGTTCCCTGCCTTTCTTCTCCTTTATTAATCCTCTCCCTCTTTTCC
CCCTATTTCTTTTCTCTTTTCTTCGCTCCATCCCCCCCCTATATCCCTCC
CCCTTTTTCCCTTTCTTCGCCCCGTTATTCCCTTTCCCCCTTATTCCTCC
TCTTCTTTATCTCCCCCCCCTATTTTTCCTCCCCCTCCCTTCCCCTTTCC
TTTTTCCCCCCCCTCCCTTTCTTATTCCCCGCTTTCTTTCTTTCTTCCCC
CCGCCTCTTCTCCCCCGTTTCCTTTTACTCTCTCCCCTTCCCTCTTTATT
TCTACTATTTTCCCCTTTTTATTCCTTCTTTCCCTCTCTTTCTTCCCGTT
CCACTCTTTTTTTTTTTTTTCTCCCTCTCTTCTT
CCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTAGAGTGTGGTCCCTGGTAG
GTCAAGAAGGCTCCAGTAAATGGTATTGCACCCAGGAATAGATGGGCAGC
AAGTTGGACTGGACAAGCTATTATTATTTTTTAAGACACCAAGTTGGAGG
TGGGATGAGGTGGATATGGGAGCAGTGAGAGTGAATAAACATTAAAAGAT
CTGATTTTCCTATAGCTCTAATAAAGATTTAACTCTATTAACTGATCTGA
GAAATTAAGCACAAATCTACAATTTGTCAGACTCATCTGCACATGTGTAC
GTGTGATGGCCCGGTTGATGGAGATGTCTTCCTCAATTGTTTTCCTTACT
TTTGAGATACAATCTCTTCAAGGACCTGGGGCTCACCATTTCAGCATAGC
CAGCCAGCCAGCCAGCCAGTCAGCGAGCTAGAGAGCCTCCCTTTCCACCT
CTGCTGTGCTGGGGTACAGGTACATGCCACTAAGCTCTGCTCCTGTTACC
TGGGTGCCAGCGAGCCACTCACGCCTTCCAGCTTACATCTGACCGAACCA
TATCCCAAGTCCCATACTCCTCTCTTGACATTATACTTGTCAGTTTTTCC
AACTCCCCAATCCCTGTGCCGCATCTCCTTTTTTAGTCCTACCCCTTGTT
TCATTCTCCACCAGCCCCGTTTTGGTCTTTAAAAATATTACCACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_f14.g1 MSMg01no112_f14.g1 CHROMAT_FILE:
MSMg01no112_f14.g1 PHD_FILE: MSMg01no112_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:29 2005
         (370 letters)



>mm_chr11_20997909_20998678
          Length = 770

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttagagtgtggtccctggtaggtcaagaaggctccagtaaatggtattgcacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcttttagagtgtggtccctggtaggtcaagaaggctccagtaaatggtattgcacccag 507

                                                                       
Query: 61  gaatagatgggcagcaagttggactggacaagctattattattttttaagacaccaagtt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaatagatggacagcaagttggactggacaagctattattattttttaagacaccaagtt 447

                                                                       
Query: 121 ggaggtgggatgaggtggatatgggagcagtgagagtgaataaacattaaaagatctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggaggtgggatgaggtggatatgggagcagtgagagtgaataaacattaaaagatctgat 387

                                                                       
Query: 181 tttcctatagctctaataaagatttaactctattaactgatctgagaaattaagcacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttcctatagctctaataaagatttaactctattaactgatctgagaaattaagcacaaa 327

                                                                       
Query: 241 tctacaatttgtcagactcatctgcacatgtgtacgtgtgatggcccggttgatggagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctacaatttgtcagactcatctgcacatgtgtacgtgtgatggcccggttgatggagat 267

                                                                       
Query: 301 gtcttcctcaattgttttccttacttttgagatacaatctcttcaaggacctggggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtcttcctcaattgttttccttacttttgagatacaatctcttcaaggacctggggctca 207

                     
Query: 361 ccatttcagc 370
           ||||||||||
Sbjct: 206 ccatttcagc 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)