BAC Information

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BAC

Clone NameMSMg01-112H20
Chromosome11 (Build37)
Map Location 36,942,798 - 36,943,436
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112H20.T7 (MSMg01no112_h20.b1)MSMg01-112H20.TJ (MSMg01no112_h20.g1)
ACCAG324887
length721717
length of high quality
(start - end)
---639 (74 - 712)
definitionCHROMAT_FILE: MSMg01no112_h20.b1 PHD_FILE: MSMg01no112_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:39 2005CHROMAT_FILE: MSMg01no112_h20.g1 PHD_FILE: MSMg01no112_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGGTTGCCCTTTTCCTTTGAAGACATGTACCACAGTATCTTA
TAACATATACACATACACACACCCACGCCCCACATTTATCTCTCTATCTC
GATGAACATATACAAATATATCGTGGTATATATCTCATACATATAATAGG
TAGTATATAGTGTGTGAATTGTATACATACACCCACTGAGAAATGAGCGA
CGAGTGTGTGTGTGAGTAGAAAAATAGATGCATAAAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTAGTTTTGAATTAACTATTTGTTT
TTAAAACAAACCCACAGAGGCACTAGTTTTCTTTTTATAGGGAAATGAAT
TAGAATATTTTATTACCATTCTTTTCTAAGACTAATAAATTACCTCTTTT
AAAAAAAGAACGAAAAGAAAAATAGGGCCACCTGCGCACTCAGTACCAAT
TGAGGCCACTTTTCAGAAACTGGCACTTGCTTTGTACTGCTACCTGAATT
CAAGAGAAATTACCTTTTTATGTCACCTGTCAATCCTCCATTACTGAAGA
CAAAACAGCTCCGCCCTGAACTAGGAGCACCCAGGACTTGCAGACAAGCT
TGCCAGTAGTTCTTACATCCGACCCAGTTTCACTCAACCACAGCCCCGAG
TCGAGACCCCTAGATTCTGGAAACAAAATCAATCAGACCAGGTCCTGTTG
GGCAACCACACCTATCCTAAGTGATGTGTCTTTCTTAAAAGCATCTTTCT
ATCAATCCTCCTCATCTGCCTTTATGTCCTGACACCTAAAACACACTACA
TTTCGTTTGCTGAGACCAACCCTTCCTTGCCCATCCCTCTTGCCAGTCCA
CTCTTAATGTCTGTATTCTTGAATGATATGCCACACAAGGAGGAAGAATA
GAATGCTGTTTAGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_h20.g1 MSMg01no112_h20.g1 CHROMAT_FILE:
MSMg01no112_h20.g1 PHD_FILE: MSMg01no112_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:39 2005
         (639 letters)



>mm_chr11_36942598_36943636
          Length = 1039

 Score = 1212 bits (627), Expect = 0.0
 Identities = 636/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttagttttgaattaactatttgtttttaaaacaaacccacagaggcactagttttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttagttttgaattaactatttgtttttaaaacaaacccacagaggcactagttttctt 260

                                                                       
Query: 61  tttatagggaaatgaattagaatattttattaccattcttttctaagactaataaattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatagggaaatgaattagaatattttattaccattcttttctaagactaataaattac 320

                                                                       
Query: 121 ctcttttaaaaaaagaacgaaaagaaaaatagggccacctgcgcactcagtaccaattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttttaaaaaaagaacgaaaagaaaaatagggccacctgcgcactcagtaccaattga 380

                                                                       
Query: 181 ggccacttttcagaaactggcacttgctttgtactgctacctgaattcaagagaaattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccacttttcagaaactggcacttgctttgtactgctacctgaattcaagagaaattac 440

                                                                       
Query: 241 ctttttatgtcacctgtcaatcctccattactgaagacaaaacagctccgccctgaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ctttttatgtcacctgtcaatcctccattactgaagacaaaacagctccaccctgaacta 500

                                                                       
Query: 301 ggagcacccaggacttgcagacaagcttgccagtagttcttacatccgacccagtttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagcacccaggacttgcagacaagcttgccagtagttcttacatccgacccagtttcac 560

                                                                       
Query: 361 tcaaccacagccccgagtcgagacccctagattctggaaacaaaatcaatcagaccaggt 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaccacagccccgagtcgagactcctagattctggaaacaaaatcaatcagaccaggt 620

                                                                       
Query: 421 cctgttgggcaaccacacctatcctaagtgatgtgtctttcttaaaagcatctttctatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgttgggcaaccacacctatcctaagtgatgtgtctttcttaaaagcatctttctatc 680

                                                                       
Query: 481 aatcctcctcatctgcctttatgtcctgacacctaaaacacactacatttcgtttgctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatcctcctcatctgcctttatgtcctgacacctaaaacacactacatttcgtttgctga 740

                                                                       
Query: 541 gaccaacccttccttgcccatccctcttgccagtccactcttaatgtctgtattcttgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaccaacccttccttgcccatccctcttgccagtccactcttaatgtctgtattcttgaa 800

                                                  
Query: 601 tgatatgccacacaaggaggaagaatagaatgctgttta 639
           |||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 tgatatgctacacaaggaggaagaatagaatgctgttta 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)