BAC Information

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BAC

Clone NameMSMg01-112I03
Chromosome11 (Build37)
Map Location 74,193,934 - 74,194,109
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412
Downstream geneGarnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112I03.T7 (MSMg01no112_i03.b1)MSMg01-112I03.TJ (MSMg01no112_i03.g1)
ACCAG324900AG324901
length757734
length of high quality
(start - end)
124 (71 - 194)176 (75 - 250)
definitionCHROMAT_FILE: MSMg01no112_i03.b1 PHD_FILE: MSMg01no112_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:41 2005CHROMAT_FILE: MSMg01no112_i03.g1 PHD_FILE: MSMg01no112_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGCCGACGCGGAATTCAAC
ACTTGATGGCGATAAAAACTTGAACTCAGGAGCTTCCTCCCTCTGCTTCT
TGAGTGCTGGGATGCCACCCAAGTTCTCACTCTATCCTGGTAAAAGTTCA
TGCCACATACAATGCTCCATTTTAGGTGTCTGCTGATAGACATTCGCTGT
GTAGCGTTGTTTATCTTACATATTTTATAACTATCCCCTACATCTTTCTC
CATAACTCTCTCTGCTTTCAGGGCACTCTCCATCCCTCCTCCCTCCTGCC
CCTGGTAGTCCCCTCTATTATGTTTGACTCAATGGTTTTGCCTGATCCGG
GCATCTCTTTTTTATCTGCGCATCCATGATTTGTGGTCTTCTGTGGATGT
TTTCTTTTACTCACCCGCACATACTCGAGATTTACTATGCCATGACCTAT
ATTGCTACTTTATGTCCGGCTGACTATTGAATACTATCCTGTCTTGTGTT
TATCCCCCACTTTTTTTTATTCCTCTGATCCTGCATGTCCCCTTCGTTTC
CGTTTTTTTCCTTTATTTCCCTCCCCTTTATTCCCCCTCCCATTCCTTCC
CCGCCCCTCTTTTTCGTTTTTACACTCCCCGCTTTTCACTTCGCCTTGTC
TTTGTTCCGCCCTCTTTTTGTTTCTCCCCTCGCTCCTTTCTTACCTTTTC
CCCCTTCTCCCCGTTTTTTTTTTATTCCCCGTTTTCTCTTACCCATATCT
CGCTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCCCAATTCCAGGGTACCAGCAGGTTCCAAAAG
TGTTAAGGGCTAGTTATTGGCCCGGGTGAATGACATCCATGCCTTGTACA
GCACTTTCTACATACATGAGAATTCTGTCCATAGCTAATATCTCCCCTTC
CTGTTTTCAGAGAGAAAAGTTGAACTCAGGAAGCAACCAAACCCTGAGGG
GCATACAGAGAGGTACCAGCTGCTTGTATGAAAGATGGCGCTTCAGTTCA
AATCCTGGAGGAGGCACTGCAGCCCCCAGTCCATGAGACTGCAGGTATGG
TGTTCCATACAGGACAGGTAAGCCAATAGCACTAATAACGCATGTTACCT
GCTATACTGCTGTTCATTCAGCACTCCCAGTCATCTATAATTTACTTTCA
TGTTAACATCAGCCCTTAGATTCCCGTCCTAACATGAGATGTGATTGGTC
CTTTAACCGGAATGCAAACACCACCAGTCTTGACGAGCTACTTTGTATAC
CGATATTCTAATTACCTCTTCCCCCCGGCTCGTTTCCAAATTGCTAACCT
CGGTCCTATGCATCTGATGTACCCCGCCATAATGCTCCTCAGTCCAATAA
AGCCTAAACTTTTCGTCCTTGATTTTGCCCACTAGGAACACTAAGTGTGC
ATCAATTACCAATTGTGCCAGCTCCCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_i03.g1 MSMg01no112_i03.g1 CHROMAT_FILE:
MSMg01no112_i03.g1 PHD_FILE: MSMg01no112_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:41 2005
         (176 letters)



>mm_chr11_74193734_74194309
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagggtaccagcaggttccaaaagtgttaagggctagttattggcccgggtgaatgac 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagggtaccagcagggtccaaaagtgttaagggctagttattggcccgggtgaatgac 260

                                                                       
Query: 61  atccatgccttgtacagcactttctacatacatgagaattctgtccatagctaatatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccatgccttgtacagcactttctacatacatgagaattctgtccatagctaatatctc 320

                                                                   
Query: 121 cccttcctgttttcagagagaaaagttgaactcaggaagcaaccaaaccctgaggg 176
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cccttcctgttttcagagagaaaagttgaacccaggaagcaaccaaaccctgaggg 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)