BAC Information

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BAC

Clone NameMSMg01-112K11
Chromosome11 (Build37)
Map Location 76,955,819 - 77,105,054
singlet/doubletdoublet
Overlap geneEfcab5, Ssh2
Upstream geneVps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, LOC628108
Downstream geneLOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K11.T7 (MSMg01no112_k11.b1)MSMg01-112K11.TJ (MSMg01no112_k11.g1)
ACCAG325007AG325008
length737734
length of high quality
(start - end)
187 (72 - 258)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no112_k11.b1 PHD_FILE: MSMg01no112_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:52 2005CHROMAT_FILE: MSMg01no112_k11.g1 PHD_FILE: MSMg01no112_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,104,868 - 77,105,054)(76,955,819 - 76,956,157)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCATATAGTATTCATGGACCCTCCTACTTTCTCTTTAAAGAAGTATC
TTAGGAGACTGAGCTCTTTTCACACAATTACTTTATTGTTGTTAATAAAT
TTTGTAATGTCCCTTCTGAAAATTTGGTATAATGTCATGGTATGAAGACT
GATATGACACAGAGGAAAGTCACAGCCTGCAGTGGATTCCAATCATATGT
TTGACGAGCACAATATCATGGAAAGCACAGTCTTGAGGATCTGACTTGAA
GTCACTACATACTAGGATATGTGTATCCTAAACCAATCCCTCAACTGTTC
TGAATTAAAATATTATTATGCTGCCCACGCCTTTCTTGAACATTCTTTAT
CTAAATGACTATTACATCTTGTTATTTTATTAACTCCTTCCTCATTTGCA
TTTTCATAATATTATCATATTTTATAACTAGTTATTTACTTTTTATTATA
TATCTTCCCCATGTATGATAAATTCTATAAACACGGGTTTTGCTTCGGCC
ATCACTGGACTCTTCCTTACTTTACCATGGCATCTTACAATACCCTTTAT
AATTGCACAATTAATGATCTCATCCCTTGTCACTTTAAATTCCGATATCA
TACTACTGCTTTATATTGTCCGCCTATCTTATTACCTTTTCCATCTACCA
TGTTTATCATGCCCCTTTGTCTTGCCATTTCCCCACG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATTAATAGAAATTAGGTTGT
TTCTAGTATTTTGAGAAAAATAAGCTTCAATGAATAATCTTATTCACACA
TCCTGTGTACATTTAGATATATTTTTCTAAAGTACATAAAGGGAATTAGT
ATTTAAATTTTCTAAAGTAAATAAATGGAATAGTTTTTGCTTGTAAACTG
GGTCTTTCCTCACTCTCTTTGGAATTATGGAACTAATAATGACCTAATAG
CAACCGAGCAGTAAAAGGAGACTCTTTTCCTCGTTCTGGGATGCAAATAG
ACTGAGATGCCCGCAGCTCCCACCAGCCTGTCATCTGGCATTTGACTTCC
TTAGGAGCTTCTGCTTGGCTCACTCCTTGAAGATGAAGGTCTTCTCATCG
GCCCTCTCCCCATCTTCCTGTCCAGCTCTGAACTGTAGCCTGACTCTAAA
ACAGCCGCCACAGAGCTTCGAGCTGGTTCTGTATCTCATTCCCATAGACT
CCTTTAGAATTTGGTCAGTTTCCCAGCTCTGGTTTCCTGTAACACACATG
TATATGGTGTGTGTGTGCCTGCGTGTGTGTGTATGTGCGTACTATAAGTC
CCAGATCAATCTATAAAAAGGGGTATAGCATTATACACATGTCTACTCAT
GCCCTTCCCACTCATGCCATGTGCCACTTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k11.b1 MSMg01no112_k11.b1 CHROMAT_FILE:
MSMg01no112_k11.b1 PHD_FILE: MSMg01no112_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:52 2005
         (187 letters)



>mm_chr11_77104668_77105254
          Length = 587

 Score =  339 bits (175), Expect = 9e-98
 Identities = 184/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctcctactttctctttaaagaagtatcttaggagactgagctcttttcacacaattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 387 ccctcctactttctctttaaagaagtatcttaggagactgagctcttttcaaagaattac 328

                                                                       
Query: 61  tttattgttgttaataaattttgtaatgtcccttctgaaaatttggtataatgtcatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttattgttgttaataaattttgtaatgtcccttctgaaaatttggtataatgtcatggt 268

                                                                       
Query: 121 atgaagactgatatgacacagaggaaagtcacagcctgcagtggattccaatcatatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 atgaagactgatatgacacagaggaaagtcacagcctgcagtggattccaatcatatatt 208

                  
Query: 181 tgacgag 187
           |||||||
Sbjct: 207 tgacgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no112_k11.g1 MSMg01no112_k11.g1 CHROMAT_FILE:
MSMg01no112_k11.g1 PHD_FILE: MSMg01no112_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:52 2005
         (339 letters)



>mm_chr11_76955619_76956357
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttattaatagaaattaggttgtttctagtattttgagaaaaataagcttcaatgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttattaatagaaattaggttgtttctagtattttgagaaaaataagcttcaatgaata 260

                                                                       
Query: 61  atcttattcacacatcctgtgtacatttagatatatttttctaaagtacataaagggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttattcacacatcctgtgtacatttagatatatttttctaaagtacataaagggaat 320

                                                                       
Query: 121 tagtatttaaattttctaaagtaaataaatggaatagtttttgcttgtaaactgggtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtatttaaattttctaaagtaaataaatggaatagtttttgcttgtaaactgggtctt 380

                                                                       
Query: 181 tcctcactctctttggaattatggaactaataatgacctaatagcaaccgagcagtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcactctctttggaattatggaactaataatgacctaatagcaaccgagcagtaaaa 440

                                                                       
Query: 241 ggagactcttttcctcgttctgggatgcaaatagactgagatgcccgcagctcccaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagactcttttcctcgttctgggatgcaaatagactgagatgcccgcagctcccaccag 500

                                                  
Query: 301 cctgtcatctggcatttgacttccttaggagcttctgct 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgtcatctggcatttgacttccttaggagcttctgct 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)