BAC Information

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BAC

Clone NameMSMg01-113G07
Chromosome11 (Build37)
Map Location 51,062,508 - 51,062,752
singlet/doubletsinglet
Overlap genenone
Upstream geneMaml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699
Downstream geneBC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113G07.T7 (MSMg01no113_g07.b1)MSMg01-113G07.TJ (MSMg01no113_g07.g1)
ACCAG325542AG325543
length696704
length of high quality
(start - end)
414 (70 - 483)364 (68 - 431)
definitionCHROMAT_FILE: MSMg01no113_g07.b1 PHD_FILE: MSMg01no113_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:48 2005CHROMAT_FILE: MSMg01no113_g07.g1 PHD_FILE: MSMg01no113_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGACCGCGGAA
TTCACTCTTGCCCTGCCTAAAGGCTTGTTTACTAGTTAGGCACAGCGGAG
GCCCGCGCCATCTTATAATGGCGATTGCTCGCTGCACACACGGCTCTCCT
CAGAGATTACTGGCGGCACACATGCGATTGCTCGCAGCACGTACCGGCTC
TCCACAGAATTTGGACATCTCCATCTCAGGTCCTTTCTGTAACAGGGCTG
GTGAGTTAAGTCACAGGGCTTAGGCTGGAGCTCAGAGACTGCTTGAATGG
ACCCCCTTAGGGCGAAACTCAACCAAACCAACCATCCAAACCTCTAAGAT
GTATAGCAGAGGCAATTCTTTTTTAAGAAGCTTTGCTGAATAGAAAAACC
AGCTCTTCCAGAAAAACAGCCCCACAAGCACTTCCCAAAGTCAGCAATTT
CACACAATTTACAACAAGAGAAAGGGAAATATAAAAAATGGATACAGGCA
TTACAAGAAAGTTAAAATCACATTATAAATAAAAATAAGGACAATATTAC
GATAATAGAAACACACGAACAGAAATTAGGAGAAATGCAGATAGTCCCAT
AAGAGATTTTTCACACATTACTAACAAAGCTGACCCAGATACTTAGATGT
ATACCAGACGAATAAAGGCTGAGTTTAATACACCCCCTCATAATGA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTGATAACAGCTGGGATCAACAAGGGTTCCAC
CTAAGATTCACTAATCTTACAAGCCAGGGTCAAGGGCTTCGCACCCTTGC
CATAGTTCCTATTTTAGTCTCTTGTATAGTCCACCTTCCCCTTAGGCCAT
TGTAAATACGTGTGTATGGGTGTAACTCTGCTACAGTTCTAAGTATCTAT
TCTGGTTTCTCCTTTGGTCTGAAACTTCCTTCTTCCTTAGTGATGGTAAA
TTCCTGTGTAAGGGAGTGACTTAGCTTTTACAATCTTACTGAATTCCAAG
CCCATGATCTTGCTCAAGGACATTTCTAGGACTGTTGTAACACTGGCGGG
AGGCTTTAGCCATGTCAGAATTCAACTTTAAAAAGCACTTAGAATAGGAA
AATACTGAAAGAGAGCACGTGGATCCATACACTAGACTAACTCGGGAATG
GAAAATTAATGTATGGGTAGGGAATGCTAGACTCCATGATGAGAGCTTCT
TTGAAACTCTTTTGCCTCATGAGTGACTTTTAACCTTTTCGGCTTGTCCC
GCTGACTCAATTGGAAAAGTTACTTACCCCAGGTGACCTTTCTGTCCTGA
ACCCCCTTGCCTCCTCTCATAAAAATTTTTTAGGGGAATTCTCATTTACT
GATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_g07.b1 MSMg01no113_g07.b1 CHROMAT_FILE:
MSMg01no113_g07.b1 PHD_FILE: MSMg01no113_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:48 2005
         (414 letters)



>mm_chr11_51062171_51062984
          Length = 814

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 138 gaatttggacatctccatctcaggtcctttctgtaacagggctggtgagttaagtcacag 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaatttggacatctccatctcaggtcctttctgtaacagggctggtgagttaagtcacag 523

                                                                       
Query: 198 ggcttaggctggagctcagagactgcttgaatggacccccttagggcgaaactcaaccaa 257
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 522 ggcttaggctggagctcagagacttcttgaatggacccccttagggctaaactcaaccaa 463

                                                                       
Query: 258 accaaccatccaaacctctaagatgtatagcagaggcaattcttttttaagaagctttgc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 accaaccatccaaacctctaagatgtatagcagaggcaattcttttttaagaagctttgc 403

                                                                       
Query: 318 tgaatagaaaaaccagctcttccagaaaaacagccccacaagcacttcccaaagtcagca 377
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgaatagaaaaaccagctcttcaagaaaaacagccccacaagcacttcccaaagtcagca 343

                
Query: 378 atttc 382
           |||||
Sbjct: 342 atttc 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)