Query= MSMg01no113_g20.b1 MSMg01no113_g20.b1 CHROMAT_FILE:
MSMg01no113_g20.b1 PHD_FILE: MSMg01no113_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:51 2005
(513 letters)
>mm_chr11_29687605_29688518
Length = 914
Score = 932 bits (482), Expect = 0.0
Identities = 506/514 (98%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 ctctccctcccccctcctcttcccccctccccctcctcccttgcaagg-ataatatgact 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctctccctcccccctcctcttcccccctccccctcctcccttgcaaggtataatatgact 260
Query: 60 taaaaacaatttttttaaaaagaaaaccataattatgggtatgtgttttctcccttttta 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaacaattttttaaaaaagaaaaccataattatgggtatgtgttttctcccttttta 320
Query: 120 aaattattacaagaagaaacatttaggtcaccactctttcattccctctgcctgctgtgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattattacaagaagaaacatttaggtcaccactctttcattccctctgcctgctgtgc 380
Query: 180 agtttttttctttgctttctcttcctatttctgcccacgagtgcatgtatacatacacac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttttttctttgctttctcttcctatttctgcccacgagtgcatgtatacatacacac 440
Query: 240 aaatacacctactctttaacatacatacacacaaacatccacacatgcacagaaacatac 299
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatacacctacacacaaacatacatacacacaaacatccacacatgcacagaaacatac 500
Query: 300 acatacacacacacatacaaacacacgcacacaaacatacccacacacaaatacacctac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatacacacacacatacaaacacacgcacacaaacatacccacacacaaatacacctac 560
Query: 360 acataaacatacacacaaacacatatacacaaacatacacacatacacacatacacacaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acataaacatacacacaaacacatatacacaaacatacacacatacacacatacacacaa 620
Query: 420 atatacacaaacatacacaaacattcacacatacacagaaacatacacacaaatacaaat 479
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatacacaaacatacacaaatattcacacatacacagaaacatacacacaaatacaaac 680
Query: 480 ataacatacatatataaacatacacatacacaga 513
||||||||||||||||||||||||||||||||||
Sbjct: 681 ataacatacatatataaacatacacatacacaga 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_g20.g1 MSMg01no113_g20.g1 CHROMAT_FILE:
MSMg01no113_g20.g1 PHD_FILE: MSMg01no113_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:51 2005
(473 letters)
>mm_chr11_29794857_29795729
Length = 873
Score = 899 bits (465), Expect = 0.0
Identities = 471/473 (99%)
Strand = Plus / Minus
Query: 1 ctattaaaggaaatttagctaactcgcctttatgtcatgagtctctgagcatggagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 673 ctattaaaggaaatttagctaactcgcctttatgtcatgagtctctgagtatggagggaa 614
Query: 61 tagtactttggaaagtaaacaaaccaagctttagaggatgttttcataacaattgcagtc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 tagtactttggaaagtaaacaaaccaagcgttagaggatgttttcataacaattgcagtc 554
Query: 121 agagagacatgcctaaacaaggcatatgccaagccctagcacgaagcagtgttgggtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agagagacatgcctaaacaaggcatatgccaagccctagcacgaagcagtgttgggtctc 494
Query: 181 ttgctggtctgtacatcctgcttgtgcatgtggtagactgctgctacttttgagggctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttgctggtctgtacatcctgcttgtgcatgtggtagactgctgctacttttgagggctgt 434
Query: 241 ccactctacaagacagtcctctgctcaattaaatgctgttaagtttaatttgtctaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccactctacaagacagtcctctgctcaattaaatgctgttaagtttaatttgtctaacca 374
Query: 301 ttttcttttagcagtactgaatgtcacatggtatacctatctgatttcagtgactgtgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttttcttttagcagtactgaatgtcacatggtatacctatctgatttcagtgactgtgcc 314
Query: 361 cctttggtctgtcatacttaatagttaagggcagattgttagtttagtgagaatttgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctttggtctgtcatacttaatagttaagggcagattgttagtttagtgagaatttgtta 254
Query: 421 ctggtgacctagccataaagcttggctccaggtccaaacacttgcaagattaa 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctggtgacctagccataaagcttggctccaggtccaaacacttgcaagattaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
