BAC Information

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BAC

Clone NameMSMg01-113J14
Chromosome11 (Build37)
Map Location 56,362,969 - 56,363,337
singlet/doubletsinglet
Overlap genenone
Upstream geneGlra1, Nmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113J14.T7 (MSMg01no113_j14.b1)MSMg01-113J14.TJ (MSMg01no113_j14.g1)
ACCAG325696AG325697
length714720
length of high quality
(start - end)
413 (44 - 456)370 (67 - 436)
definitionCHROMAT_FILE: MSMg01no113_j14.b1 PHD_FILE: MSMg01no113_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:04 2005CHROMAT_FILE: MSMg01no113_j14.g1 PHD_FILE: MSMg01no113_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCTTTGTTCTGCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATCGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAAC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTAGTCTAGCTCTATACAGTACCATGCAGGTTTTAACGCAATTGCTCTGT
AGGAATGGTTTAGGTCTGGTAATGAGATTCCGCCCGAAATTCTTTTTATC
TTTGAGAAGATTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTCTTGGTTCCTACAGTCACCCAGAGGAAGAA
ATTTATAAGTCCTTGTCTATCTATAACTTATAGAGGCAACTGAAATTAAT
CAAAATACTCAATAATCATGAAAAAAATAATTAAGCAATAGTCAGTTTGC
AAGAATGCTCTGAGATATTTTAGAGTTTGAGTAGTGTGTGGTTGAGTATT
GAGTTTAAAAATGAATCACATGGGCTGAAGGCAATTCTCAGTACAGTAAT
CTCTGGGTTCGTTCTCCAGCACCACATAAACTGAACATGATTGTATAATC
TCAGGACTCAAAAAGTGGAATGAGGAAGTGCTGAAGTTCAAGGTCATTGC
TACTATGTACCGAATTCCAGGCCAGTTTGAGCTACATAAAATCATGTGTC
AAAAGATATATTTGGACATAATATTGCAATGAAATGGGTCTTGAATATAC
ATACGATGTAATTATTCAAGGTCGTTAAACGCATATGGCAGAGTTGACTA
GATGGTGCTGTGGGTATAGACAACTGCTGGTGCTATCTGATGCTGACTTC
GTCCCCTAGAACTCCTACCGAGTTTAAAGGATAGAACCGACTTCACAGGT
ACCCGGGTTACCCTGTTTAAATGGCAGCACGTGCCAATCAAACCCGAAGA
AGAGTACCCTACACATAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_j14.g1 MSMg01no113_j14.g1 CHROMAT_FILE:
MSMg01no113_j14.g1 PHD_FILE: MSMg01no113_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:05 2005
         (370 letters)



>mm_chr11_56362769_56363537
          Length = 769

 Score =  692 bits (358), Expect = 0.0
 Identities = 367/370 (99%), Gaps = 1/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcttggttcctacagtcacccagaggaagaaatttataagtccttgtctatctataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcttggttcctacagtcacccagaggaagaaatttataagtccttgtctatctataa 260

                                                                       
Query: 61  cttatagaggcaactgaaattaatcaaaatactcaataatcatgaaaaaaataattaagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cttatagaggcaactgaaattaatcaaaatactcaataatcatgaaaaaa-taattaagc 319

                                                                       
Query: 121 aatagtcagtttgcaagaatgctctgagatattttagagtttgagtagtgtgtggttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatagtcagtttgcaagaatgctctgagatattttagagtttgagtagtgtgtggttgag 379

                                                                       
Query: 181 tattgagtttaaaaatgaatcacatgggctgaaggcaattctcagtacagtaatctctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tattgagtttaaaaatgaatcacatgggctgaaggcaattctcagtacagtaatctctgg 439

                                                                       
Query: 241 gttcgttctccagcaccacataaactgaacatgattgtataatctcaggactcaaaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttcgttctccagcaccacataaactgaacatgattgtataatctcaggactcaaaaagt 499

                                                                       
Query: 301 ggaatgaggaagtgctgaagttcaaggtcattgctactatgtaccgaattccaggccagt 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 500 ggaatgaggaagtgctgaagttcaaggtcattgctactatgtagtgaattccaggccagt 559

                     
Query: 361 ttgagctaca 370
           ||||||||||
Sbjct: 560 ttgagctaca 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space:   274360
Effective search space used:   274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)