BAC Information

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BAC

Clone NameMSMg01-113K13
Chromosome11 (Build37)
Map Location 87,622,872 - 87,623,309
singlet/doubletsinglet
Overlap geneLpo
Upstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo
Downstream geneMks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K13.T7 (MSMg01no113_k13.b1)MSMg01-113K13.TJ (MSMg01no113_k13.g1)
ACCAG325742AG325743
length720696
length of high quality
(start - end)
356 (48 - 403)441 (71 - 511)
definitionCHROMAT_FILE: MSMg01no113_k13.b1 PHD_FILE: MSMg01no113_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:09 2005CHROMAT_FILE: MSMg01no113_k13.g1 PHD_FILE: MSMg01no113_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCTTACATGTCCGGACCTTCCTACCCCATCTCATGATTCTGCCTC
CTTCCTCTCTCCTGGTTCCTCACCGGAACAAATCTCCAAGTCCTGCCTCA
GTTTACCTGCCCATCCATTGGCTGTTGGATCTTTATTGATTGATTAAAAA
CCAATTGGGGATAAGAACCTTTGGTGTTTGGACACATAGATTCCTGATTT
TGGGGGGGGCAAAATAATTCAAAGCATTGGAATCAATTCCCAACAAAAAA
CCTTATAGATCTGACCAACAATTTCTGATCTTGCCCTCTGGACTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCTCTCACTCACCCACACACATAGNATCCCCCCCGCATTATAGCT
ATTCTACACCCTTCTTCGGCAATATATCATGACTGAAATTAAACCTAGCA
TGGTACACATGATATGCCCCCACACATACTTTATTTCCACCATCCCACCA
TATTTCCTCTTAATTTTTTCTCCCCCACCCCCTCGACAAACATCGATAAG
ATATATCTCCCCCTTCACATGTTATCTCACATTCCTATATCTCACCTTGT
CCCCTACCTATTTTTTTCCAGTATAAACTCAGCCCCCCCGGCATATATAA
CCATATCCACACATCTCCCG
ATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCTGCCCCAGACATCTTCTCTCAATAGG
AAATGGGAAAGACTAGGAAATGTCTCTGATTGGAGGCAGGGAGAGAAGAG
GAGAGCACAAGGTAGCCTGTCCTTTGTGCCAGGGTAAGAGGAGACCAGGT
TATCCTTTCTGAGGTGACAGAAAAGGGCACTCATAGGCTGATGAATACCA
AAAGGGTTTTCATGGTCAAGTTCGGAGGAGTCAGCGCCTTTGTCTTCCAC
AGATTCCCCTGGAGGAAAAGGGACCATGCATCTTGAAGAAACATCCCTGA
CTGGTTAAGCTTGAAGGGAAGTCAAATTCAGCTGACGAATGAGATGACTG
CATTCAATCTATGATACCTCGTGGTGGTAGGAGGTTCTAGAACAGAGCTA
TTTACTCACCCCACAAATTCTCTTTTCAGGGTTCAGAGAAGTATAGTATA
GGAAATGGTAGAAGAATGTCAGCTCTGAGAAGCTGGAAGGAGAAAGTAAC
TTGTATTCACTGGTCACTCCTTGGGTCTTACGAACTCAACAGGGGGCCCT
ACGTATCCATCTCATTTCACTTGATATCCTGGTGAGGTGGGCACTATTAT
TGCCCTTATTTTATGAACCAGGAGAAGAAGACTCAGTGCGATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k13.g1 MSMg01no113_k13.g1 CHROMAT_FILE:
MSMg01no113_k13.g1 PHD_FILE: MSMg01no113_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:09 2005
         (441 letters)



>mm_chr11_87622672_87623512
          Length = 841

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgccccagacatcttctctcaataggaaatgggaaagactaggaaatgtctctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgccccagacatcttctctcaataggaaatgggaaagactaggaaatgtctctgat 260

                                                                       
Query: 61  tggaggcagggagagaagaggagagcacaaggtagcctgtcctttgtgccagggtaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaggcagggagagaagaggagagcacaaggtagcctgtcctttgtgccagggtaagag 320

                                                                       
Query: 121 gagaccaggttatcctttctgaggtgacagaaaagggcactcataggctgatgaatacca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaccaggctatcctttctgaggtgacagaaaagggcactcataggctgatgaatacca 380

                                                                       
Query: 181 aaagggttttcatggtcaagttcggaggagtcagcgcctttgtcttccacagattcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggttttcatggtcaagttcggaggagtcagcgcctttgtcttccacagattcccct 440

                                                                       
Query: 241 ggaggaaaagggaccatgcatcttgaagaaacatccctgactggttaagcttgaagggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggaaaagggaccatgcatcttgaagaaacatccctgactggttaagcttgaagggaa 500

                                                                       
Query: 301 gtcaaattcagctgacgaatgagatgactgcattcaatctatgatacctcgtggtggtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaaattcagctgacgaatgagatgactgcattcaatctatgatacctcgtggtggtag 560

                                                                       
Query: 361 gaggttctagaacagagctatttactcaccccacaaattctcttttcagggttcagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggttctagaacagagctatttactcaccccacaaattctcttttcagggttcagagaa 620

                             
Query: 421 gtatagtataggaaatgg 438
           ||||||||||||||||||
Sbjct: 621 gtatagtataggaaatgg 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)