Query= MSMg01no113_o19.b1 MSMg01no113_o19.b1 CHROMAT_FILE:
MSMg01no113_o19.b1 PHD_FILE: MSMg01no113_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:30 2005
(551 letters)
>mm_chr11_111594817_111595767
Length = 951
Score = 969 bits (501), Expect = 0.0
Identities = 536/551 (97%), Gaps = 6/551 (1%)
Strand = Plus / Minus
Query: 1 ttgtctcaaaggtatagcctgcaagatcattcaagaccagaaaatcttataatacatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ttgtctcaaaggtatagcctgcaagatcattcaagaccagaaaatcttataatacatatg 842
Query: 61 atagagattcctgtaagttgttctctgacctacacacacacacacacacacacacacaca 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 841 atagagattcctgtaagttgttctctgacct------acacacacacacacacacacaca 788
Query: 121 cacacacacacacacacacacacacacacacacacaatcacttatactcactttgaactc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 787 cacacacacacacacacacacacacacacatacacaatcacttatactcactttgaactc 728
Query: 181 tatggatatggaagaagtgtttaactctgtttcagtaaaatgtatttactactaagcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tatggatatggaagaagtgtttaactctgtttcagtaaaatgtatttactactaagcata 668
Query: 241 gtaaatgcattgcactccaacatgaagtaaaccccataggaacgtcttctacattaaacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gtaaatgcattgcactccaacatgaagtaaaccccataggaacgtcttctacattaaacg 608
Query: 301 ttgacatagaccttgataatctctccgctattgtactaagttttctagtaaatgtttgtg 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 607 ttgacatagaccttgataatctctccgctatcgtactaagttttctagtaaatgtttgtg 548
Query: 361 gaaaggacggtgaatagaacgtcacacgttgcacgactcctctgtcattactctcttgga 420
|||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||
Sbjct: 547 gaaaggacggtgaatagaacgtcacaagttgcaggactcctctgttgttagtctcttgga 488
Query: 421 gctggtatgtttgacagctttcaagtctcctgagctatgcatgctccaaacttctctgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gctggtatgtttgacagctttcaagtctcctgagctatgcatgctccaaacttctctgca 428
Query: 481 aaatgcaagagagcaaaacctgagttccttctatcatatccctgcagagctcatttccag 540
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 427 aaatggaagagagcaaaacctgagttctttctatcatatccctgcagagctcatttccag 368
Query: 541 gtctcattata 551
|||||||||||
Sbjct: 367 gtctcattata 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_o19.g1 MSMg01no113_o19.g1 CHROMAT_FILE:
MSMg01no113_o19.g1 PHD_FILE: MSMg01no113_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:30 2005
(558 letters)
>mm_chr11_111438456_111439413
Length = 958
Score = 1015 bits (525), Expect = 0.0
Identities = 550/559 (98%), Gaps = 4/559 (0%)
Strand = Plus / Plus
Query: 1 tttgaggtgagaccagggagaggggaaacattttggatgtaaataaataaaactttaaaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagatgagaccagggagaggggaaacattttggatgtaaataaataaaactttaaaa 260
Query: 61 agcttttaaaaataaataaaagaaacagattttttaaattaatatatcgcgattatgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttttaaaaataaataaaagaaacagattttttaaattaatatatcgcgattatgatt 320
Query: 121 ttccctccagctactcctcgaaggttttctttacgggcctatctcattgggtccacccca 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctccagctactcctggaaggttttctttacgggcctatctcattgggtccacccca 380
Query: 181 tttgtgtctcttatta-gaaaaagaaaaataggtttctatggtttaataataaaattaat 239
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtgtctcttattatgaaaa-gaaaaataggtttctatggtttaataataaaattaat 439
Query: 240 aaaataaaacaaaatcaatattcaccttcattggttgccataataatcaatcagactaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaataaaacaaaatcaatattcaccttcattggttgccataataatcaatcagactaac 499
Query: 300 aaaattaattaattaattaattaattaaaaaaaaagaatcagactaacaaaaaccccaga 359
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 aaaattaattaattaattaattaattaaaaaaa--gaatcagactaacaaaaaccccaga 557
Query: 360 attgagaaatctcttttcaaagttttttattttttgttttttggttttgttttttgtctg 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attgagaaatctcttttcaatgttttttattttttgttttttggttttgttttttgtctg 617
Query: 420 tctgactgtttgtttctttgtttgtttgtttgtttttggagtagcccaagttactctgca 479
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctgtctgtttgtttctttgcttgtttgtttgtttttggagtagcccaagttactctgca 677
Query: 480 aacaatatagattactgatgtggcccttggttgcttctcaaaggttaagaataggaacct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aacaatatagattactgatgtggcccttggttgcttctcaaaggttaagaataggaacct 737
Query: 540 gctgctaaaggcataggac 558
|||||||||||||||||||
Sbjct: 738 gctgctaaaggcataggac 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
