BAC Information

Click to search

BAC

Clone NameMSMg01-114C19
Chromosome11 (Build37)
Map Location 25,836,502 - 25,836,998
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream genenone
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114C19.T7 (MSMg01no114_c19.b1)MSMg01-114C19.TJ (MSMg01no114_c19.g1)
ACCAG326122AG326123
length723867
length of high quality
(start - end)
501 (40 - 540)---
definitionCHROMAT_FILE: MSMg01no114_c19.b1 PHD_FILE: MSMg01no114_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:48 2005CHROMAT_FILE: MSMg01no114_c19.g1 PHD_FILE: MSMg01no114_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGAAGGTTTAGAAAACAAGTTTCCATTGGTAACTCTCTTTCTGACCATC
CCCTCATAGAACCTAACCAGAGCAAGTCAGAGGGACATGGATGAGCACCC
CCTACCATACCCCCACTGTCTTTTACCTTACAGACCACCTGGATATTTGT
TTGTTTCTTTCTTTCTTTGTTTGGTAATGGAACAAAAGCTCCCTCTTAAT
TGCAATTTTGTGCATTAGAAGTTACATTCTATGAAACTCAAGAGGAGAAA
AAGTGCTTGTCCAATTTTGTTTGACTTTTTATTAGAAAAGCAAAAATGTT
TGCATTATGAGTTCATCACATAGTCTCGTAAAAAGAGATAGTAGTATTAG
CAAAAGAAACAAAACAAAACAAAACAAAACCTCCAATCCAAGAAAATGGT
CTTTTATCTGAACCTCTGCTCTTGGTAGCTGTGTCTCCTTCTACGGTTCA
GTATAGTAAAAGGACTAACGTTTTATCAACCTTCTAATCTGTAGAAACTG
GGAAAACATTAGAACCAATGTGTTTTACCAACACCCCTGCACAGTTTTCA
TGGAAAGTTATCTAAAATTCTCAGCTTTTTCTAACAATCATGATTTTCTT
TTATAACATACAATATTCATACCCCAAATAGAAATCTGATAAAATTTTTA
ATAGCTTTATTTCAAAAAGAATT
GATTGTAGGTACGCCGGGGGGCGCTGGGTCGCACCGTTACCGGAGCTGGG
ACGAAGTTGGGGAGGGTTATAAAAAAAGGAGGAAGGCAAAACGGTCGGGG
AATGTAGTGACACTTGTTGGCGCATGACGCTTTTGAGGGGTTAGTCTTTG
CTTAGGGCCGATTTTATTATACGCACCACCGGGTATAACACCTTTACGGC
CCTGTTTGTTATTGCCGCCAGCGGGAGGAACAATAATAGAGCCGGGGTAA
AAAAATGGCGCGGTGAGGAATAAAAGTAAAAAATATACGGGCAGATGCAA
TGAAAAAGAATAACGGGAGGCAAGAACGGAGAGAATAGTGAAGAATGGAT
AAAGGGGTGGGTTATTATCGTTTGTTGCGAACAATGTGGGTATTCGCGGC
GTCGCTTTATTTTCCCCCGCGCCGTGCGTATAAAGGGAGTAAAAATGTCG
CCTCGCGCTTATTTAACCTCCCGCGGTTGCGTGTGTTATTAGTCCGCTCT
CTTCCGGATTGCATATACCGTAGAAAGGGTGTAAAAATATAGGGATGGAT
AAATTACTGCGGAGCGGCGAAAGGATAGAGAGTCGGTATAATTAAATACG
GAGTAAACCGGTGTGTCTTGCGCGGTTATCCCGGCGCGGTGACCTCAAAA
AGGGGGAAAGAGGGGGAGAGTGGGTATAGTGGGAATACTAGAGGCGCACC
CGTCAGATGTGCGTGGGGCGGTAATATACGGCCGTTGGTTATTATATATA
TGAGGTCGGGAATAACGGGTGCGCTAGTTCTAAAGGGCGGCTTTTTGGTT
ATTGTTCCCGCGGCCCCGTTCTTGTTTTACAGCACAATTGGGTTTTATCA
CCCGGATTAGGAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_c19.b1 MSMg01no114_c19.b1 CHROMAT_FILE:
MSMg01no114_c19.b1 PHD_FILE: MSMg01no114_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:48 2005
         (501 letters)



>mm_chr11_25836432_25837332
          Length = 901

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgaaggtttagaaaacaagtttccattggtaactctctttctgaccatcccc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattccatgaaggcttagaaaacaagtttccattggtaactctctttctgaccatcccc 508

                                                                       
Query: 65  tcatagaacctaaccagagcaagtcagagggacatggatgagcaccccctaccatacccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcatagaacctaaccagagcaagtcagagggacatggatgagcaccccctaccatacccc 448

                                                                       
Query: 125 cactgtcttttaccttacagaccacctggatatttgtttgtttctttctttctttgtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cactgtcttttaccttacagaccacctggatatttgtttgtttctttctttctttgtttg 388

                                                                       
Query: 185 gtaatggaacaaaagctccctcttaattgcaattttgtgcattagaagttacattctatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtaatggaacaaaagctccctcttaattgcaattttgtgcattagaagttacattctatg 328

                                                                       
Query: 245 aaactcaagaggagaaaaagtgcttgtccaattttgtttgactttttattagaaaagcaa 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaactcaagaggaggaaaagtgcttgtccaattttgtttgactttttattagaaaagcaa 268

                                                                       
Query: 305 aaatgtttgcattatgagttcatcacatagtctcgtaaaaagagatagtagtattagcaa 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 aaatgtttgcattatgagttcatcacatagtctcgtaaagagagatagtagtattagcaa 208

                                                                       
Query: 365 aagaaacaaaacaaaacaaaacaaaacctccaatccaagaaaatggtcttttatctgaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aagaaacaaaacaaaacaaaacaaaacctccaatccaagaaaatggtcttttatctgaac 148

                                                                       
Query: 425 ctctgctcttggtagctgtgtctccttctacggttcagtatagtaaaaggactaacgttt 484
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 147 ctctgctcttggtagctgtgtctccttctatggtccagtatagtaaaaggactaacgttt 88

                            
Query: 485 tatcaaccttctaatct 501
            ||||||||||||||||
Sbjct: 87  catcaaccttctaatct 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)