BAC Information

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BAC

Clone NameMSMg01-114D21
Chromosome11 (Build37)
Map Location 100,671,486 - 100,671,994
singlet/doubletsinglet
Overlap geneStat5b
Upstream geneLOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc
Downstream geneStat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D21.T7 (MSMg01no114_d21.b1)MSMg01-114D21.TJ (MSMg01no114_d21.g1)
ACCAG326172AG326173
length801754
length of high quality
(start - end)		195 (46 - 240)518 (75 - 592)
definitionCHROMAT_FILE: MSMg01no114_d21.b1 PHD_FILE: MSMg01no114_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005CHROMAT_FILE: MSMg01no114_d21.g1 PHD_FILE: MSMg01no114_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTCTGCATGTACATCTGAATGCAAGAAGAGGGCATCAGATCA
CATTATAGATGGTTTTGAGCCACCATGTGGTGGCTGGGAATTGAATTCAG
GACCTTCAGAAGAGCAGCCAGTGCTCTTAACCTCTGAGCCATCTCTCCAG
CCCGTTTTGTTGTTGTTGTTGTTGGTGGTGGTGTTTTTTTTCTCCNNTNT
CCCCCCCCCTCCCCCCCCCCTTTCCCCTCCTCCCCCTTTCTTCTTTTCCC
TTCCCCCCCCTTCCTTTTCTTTCCCTCCTCTCTCCTTCGCCCTTCCCCTT
TCTCTTTTTTCCCTCTTTTCCCCCCCCTCCCCTTTTTTCCCTTCTTCTCC
CCCTTTTTCCCCTCTTTTTCTCCCCCCCCCCTTATTCCTTCCTTCTCCCT
TCCCCCCCCTTTTCCCCTTTTCCCCNTTTTCACCATTACCCCATCCACCT
CCCCCTCCCCCCTCCCTTTTTTCCCCCCCCCCCCTCTTCCTCCCCTTCCC
CCTCCCCTTTTCCTCCCACCCCTCCCTTCCCCTTTCCCTTCCTTCTCCCC
CTCTTCTTCCCCTTTCCTCCTACCCTCTCCTTCCCCACCCCTCCCTTCTT
ACCCCTCTCCCCCCTTTTTCACCCTCCCCCCCCACTTCTTTTCCTTCCCT
CCCCCCCACCCCTCTTTCTTCTTCCCCCCCCCCCCCTTCTCCTTATCCTC
CTCTCCCCCTCCTCTNTTCCCCCCCCCTTCCCCTTCTCCTTTCTCCCTCT
C

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCGTGGGCTTCCTGTGACT
CTTTCTTAAAGAAACAACATCAAAACCAAAACAAGCTGCACCAACAAAAA
ACATGCTTTAGAAAATGGCTTTCTGGGGGCTGGAGAGATGGCTCAGCAGT
TAAGAGCACTGACTATACTTCCAGAGGTCCTAAGTTCATGATAGCTCACA
ACCGTCTGTCATGGGATCTAGTGTGTCTGAAGACAGCTACAGTGTATGCA
AACAAACAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAA
CAAATAGATGCTTTCCGAAACTACTAGGAGCCCTTTCAGACAGACCTGAG
AATTAAGTGCATTTGGCAGAGACCTGGGATTCCCCAGAGTGGAGAAGCTA
TGTTAATAGGAACTTCAGACATTAAAACCAGACTTGCTGTAACACTGCTT
TTGGTAATACGGAACTGGGCGTCTTGAATCCAATCTGAAAATGACTTAGC
TACTGATTTTCACAGTTCGCCTAAGGATTGTGTTACAGCCATGGTCCAGT
GCACTGGACCTGGGTTTTGTTGACTCCCAGAGACTGCACGCACATGTGTG
CCAGGAAACAAAGATCTCTCTGTGAGCAGTGGCTGTCGGATCGAGTAACA
CTGAGCTATTTATGGGGCAGGTCAGTTAGCCAGCAGTGAGGTGTAGGGTG
GGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d21.g1 MSMg01no114_d21.g1 CHROMAT_FILE:
MSMg01no114_d21.g1 PHD_FILE: MSMg01no114_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:53 2005
         (518 letters)



>mm_chr11_100671286_100672202
          Length = 917

 Score =  928 bits (480), Expect = 0.0
 Identities = 505/518 (97%), Gaps = 9/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcgtgggcttcctgtgactctttcttaaagaaacaacatcaaaaccaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagcgtgggcttcctgtgactctttcttaaagaaacaacatcaaaaccaaaacaa 260

                                                                       
Query: 61  gctgcaccaacaaaaaacatgctttagaaaatggctttctgggggctggagagatggctc 120
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcaccaac-aaaaacacgctttagaaaatggctttctgggggctggagagatggctc 319

                                                                       
Query: 121 agcagttaagagcactgactatacttccagaggtcctaagttcatgatagctcacaaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agcagttaagagcactgactatacttccagaggtcctaagttcatgatagctcacaaccg 379

                                                                       
Query: 181 tctgtcatgggatctagtgtgtctgaagacagctacagtgtatgcaaacaaacaagcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 380 tctgtcatgggatctagtgtgtctgaagacagctacagtgtatgcaaacaaa-------- 431

                                                                       
Query: 241 caagcaagcaagcaagcaagcaaacaaacaaacaaacaaatagatgctttccgaaactac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 432 caagcaagcaagcaagcaagcaaacaaacaaacaaacaaatagatgctttctgaaactac 491

                                                                       
Query: 301 taggagccctttcagacagacctgagaattaagtgcatttggcagagacctgggattccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 taggagccctttcagacagacctgagaattaagtgcatttggcagagacctgggattccc 551

                                                                       
Query: 361 cagagtggagaagctatgttaataggaacttcagacattaaaaccagacttgctgtaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagagtggagaagctatgttaataggaacttcagacattaaaaccagacttgctgtaaca 611

                                                                       
Query: 421 ctgcttttggtaatacggaactgggcgtcttgaatccaatctgaaaatgacttagctact 480
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 612 ctgcttttggtaatacggatctgggcgtcttgaatccaatctcaaaatgacttagctact 671

                                                 
Query: 481 gattttcacagttcgcctaaggattgtgttacagccat 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gattttcacagttcgcctaaggattgtgttacagccat 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space:   460756
Effective search space used:   460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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