BAC Information

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BAC

Clone NameMSMg01-114E08
Chromosome11 (Build37)
Map Location 29,621,252 - 29,621,684
singlet/doubletsinglet
Overlap geneRtn4
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream geneC230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E08.T7 (MSMg01no114_e08.b1)MSMg01-114E08.TJ (MSMg01no114_e08.g1)
ACCAG326193AG326194
length704735
length of high quality
(start - end)
576 (47 - 622)433 (75 - 507)
definitionCHROMAT_FILE: MSMg01no114_e08.b1 PHD_FILE: MSMg01no114_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:55 2005CHROMAT_FILE: MSMg01no114_e08.g1 PHD_FILE: MSMg01no114_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTT
TCTGAAGTCCATTTTCTTGAGTTCTTTATATGTATTGGATATTAGTTCCG
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTAGTCTT
TTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGTAATTTTAT
GAGGTACCATTTGTCAATTCTCTATCTTACAGCACAAGCCATTGCTGTTC
TGTTAGGAATTTTTCCGCTATGCCCATATCTTCGAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTTCTTGATC
CATGTAGACTTGAGCTTTGCACAAGGAGATAAGAATGGATCAATTCTCAT
TCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTTCTACTGGAGGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTTTATTCCATTGAT
CTACCTGTCTATCGCTGTACCAGTACCATGCAGTTTTTATCAAAATTGCT
CTGAAATACAGCTTTTGGTCAGGCTTGGCGAATCCACTAGAGGTTCTTTT
ATCT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGATTCTTGGTTGGTAAGAGGCCTC
ACCAGGGGAAGGAGCTCCTTTCCCTTCCCACCCCCACAGTCTTTCCTTCC
TTTCCAATCACACCTGCTTTATAAGCACTGAGAAGACACTGTTAATACAG
TGACTAGAATTTCCTGGGTAGAGTAGACTTCATAGGATAAAGTTGACAGA
TAGATTTGTAGGCTCAAAGATGATAGAAGGTTAGACGGTCTAGGTCAGGT
TTCCTGAAGCTTCTCCGTGGTTCACAAGAAAGAGTCCTGTGATCCTATCA
AAACAAGCTCTACAGGGCCTGGCAATCTGGTGTCATCATTTTATAATTGG
GCAGATTTGGAAAACAACCTAGGGTTCACACCTTAGTTCTAGTATGTTTT
GATTTTGACTAGGTATGAAACTGCCTCTTAAGTTTTTATTCTGTTGTGTG
ATTTATAGGGTTCCAGTTTTGAGGCTCTCTGGGGTTTTATGACAAGATGC
TCTGGGCCAGGCTGCATTGGCTTGATGTTTAAAGTACGTAGCAATAATAA
GTAGTGGTGGGCTTCAGAAGGTCACCCGCGCCGCATCCAACCCCTGCACC
ATAACCTATAGCACTGACGTTCGCCCACGATTTAGCCTCTCCTTGGACCC
CCACATACGAACCTTTGAATCTCCCCCCGCCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e08.g1 MSMg01no114_e08.g1 CHROMAT_FILE:
MSMg01no114_e08.g1 PHD_FILE: MSMg01no114_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:55 2005
         (433 letters)



>mm_chr11_29621052_29621884
          Length = 833

 Score =  762 bits (394), Expect = 0.0
 Identities = 424/434 (97%), Gaps = 2/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattcttggttggtaagaggcctcaccaggggaaggagctcctttcccttcccacccc 60
           ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 201 ttgattcttagttggtaagaggcctcaccaggggaaggggctcctttcccttcccaaccc 260

                                                                       
Query: 61  cacagtctttccttcctttccaatcacacctgctttataagcactgagaagacactgtta 120
           || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 catagtctttccttcctttccaatcacacctgctttagaagcactgagaagacactgtta 320

                                                                       
Query: 121 atacagtgactagaatttcctgggtagagtagact-tcataggataaagttgacagatag 179
           ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 321 atacagtgactagaatttcctgggtagagtagactgt-ataggataatgttgacagatag 379

                                                                       
Query: 180 atttgtaggctcaaagatgatagaaggttagacggtctaggtcaggtttcctgaagcttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttgtaggctcaaagatgatagaaggttagacggtctaggtcaggtttcctgaagcttc 439

                                                                       
Query: 240 tccgtggttcacaagaaagagtcctgtgatcctatcaaaacaagctctacagggcctggc 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctgtggttcacaagaaagagtcctgtgatcctatcaaaacaagctctacagggcctggc 499

                                                                       
Query: 300 aatctggtgtcatcattttataattgggcagatttggaaaacaacctagggttcacacct 359
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 aatctggtgtcatcattttataattgggcagatttggaaaacaatctagggttcacacct 559

                                                                       
Query: 360 tagttctagtatgttttgattttgactaggtatgaaactgcctcttaagtttttattctg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagttctagtatgttttgattttgactaggtatgaaactgcctcttaagtttttattctg 619

                         
Query: 420 ttgtgtgatttata 433
           ||||||||||||||
Sbjct: 620 ttgtgtgatttata 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)