BAC Information

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BAC

Clone NameMSMg01-114G10
Chromosome11 (Build37)
Map Location 43,771,239 - 43,771,508
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
Downstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114G10.T7 (MSMg01no114_g10.b1)MSMg01-114G10.TJ (MSMg01no114_g10.g1)
ACCAG326291AG326292
length719715
length of high quality
(start - end)
273 (43 - 315)162 (124 - 285)
definitionCHROMAT_FILE: MSMg01no114_g10.b1 PHD_FILE: MSMg01no114_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:05 2005CHROMAT_FILE: MSMg01no114_g10.g1 PHD_FILE: MSMg01no114_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTATATGCATGAGCAGGAAAGGGAAGAAAATGTGCATTGTCACAGGTA
GGAGGCACAGGCCATGCACCCGGGGTCTAAAAGAGCAGCCACTGCTCTCT
ACCTTAGCCTGTCTAGACCATACCTGTTTTTTCATGGAAGCCAGGATATG
CTTTTAAAAATAAACAACTCTTTTGAATATTAAACACAGGCAAAAGTTGA
AAGTACTCTCTGGTCAAAAATCAAACCTCAACCAAAACCCTTGCTATTTT
ATATAGAGATATGAAGCCACCTACCTAACTTTCCTAATGATTTGAGATGA
GTCCTTTCTCAGGTATCTGCATGCAGATGGAGATGACGGGGACATATGGG
AACCAAAGGTAGCATGAGGTGACTGAGTTGGGGTGCTCACTGTCATGCTT
GAGCCCCACCTAGCCTAACAAGGTGATTCGGCACCTGTCTAGTCCTTTGT
AAGGTACCTTCCCTGGACTGTGACCCTTGCCTACAGCCTGGCACCAGCCC
CGCAATGACAACCCCCCCAAATCCTCGCAATCTCGGCTGGCCCCACAACC
CCGAATGTACTGGCCCGTCCTCGAAGTCTCCTGACTAAACTATCCTGGCG
TCGTGATTCTGTTTCGACCTTCCCTGCCTGCTCAGTTTACCGCTAATACT
AACCGGCTCTGTTCTTTAT
ATGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTGCCATGCCCCCTGTACACTTATG
GGATATTTANAACAGTGCGNANATGTCAGGGGCCATCAGTAATATTTCAG
TGGCTCGTCTCTCATCTGCCTTCAACTTCTTTAGTCCGTGACAGTACATG
GGGNTTCAGAGGNCTTTCCCAAAAACAACACTGAAAAGGGAGAAAAAACA
TTTTNTCCAAGGCAGCATTGTAAGCCAAGGTTGGGGGGTGGGAACAATTT
CCAGCCACTTCCATCTTAATGGGAACCATCACCCCACTGTANGNTCCAAG
GTGATGACAAGGGGGGGGCGGGNACCACTGCCCCGGGNTGTGNNNNNNNC
ATCCCAAGGGNCTCTTGTGAATTGCCCCTTCGAGAGAANNNNNNNCNNNN
NNATCATAAGTGGCTTTTTTTTAATGGAAGAGGCGCACGGNCCCTCNNNA
AAATTGAGCCCTTTTGGCCTTTTGCCATAAAAACCACCCCTGAATTCCTG
CCTTTTGCTAACACGGAAAACTTTAATCCCCCACAAAAAGGCCCCCCCGC
AAAAAATTTTTCCCCCAACACCTAAACTAGGGGNNNNNNCCNNNTCCCCC
CCTTTCTTCTCNCCCCCCNATACCCCGCACAAACACACCATAGTGTTTGG
GGGGGGCGGGTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_g10.b1 MSMg01no114_g10.b1 CHROMAT_FILE:
MSMg01no114_g10.b1 PHD_FILE: MSMg01no114_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:05 2005
         (273 letters)



>mm_chr11_43771036_43771708
          Length = 673

 Score =  491 bits (254), Expect = e-143
 Identities = 266/270 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatatgcatgagcaggaaagggaagaaaatgtgcattgtcacaggtaggagg 63
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatagggatgagcaggaaagggaagaaaatgtgcattgtcacaggtaggagg 263

                                                                       
Query: 64  cacaggccatgcacccggggtctaaaagagcagccactgctctctaccttagcctgtcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacaggccatgcacccggggtctaaaagagcagccactgctctctaccttagcctgtcta 323

                                                                       
Query: 124 gaccatacctgttttttcatggaagccaggatatgcttttaaaaataaacaactcttttg 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 gaccatacctgttttttcatggaagccaggatatacttttaaaaataaacaactcttttg 383

                                                                       
Query: 184 aatattaaacacaggcaaaagttgaaagtactctctggtcaaaaatcaaacctcaaccaa 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 aatattaaacacaggcaaaagttgaaagtactctctggtcaaaaatcaaacctcaaacaa 443

                                         
Query: 244 aacccttgctattttatatagagatatgaa 273
           ||||||||||||||||||||||||||||||
Sbjct: 444 aacccttgctattttatatagagatatgaa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)