BAC Information

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BAC

Clone NameMSMg01-114I15
Chromosome11 (Build37)
Map Location 16,545,525 - 16,546,159
singlet/doubletsinglet
Overlap geneLOC665689
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC627583
Downstream geneEgfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114I15.T7 (MSMg01no114_i15.b1)MSMg01-114I15.TJ (MSMg01no114_i15.g1)
ACCAG326395AG326396
length728740
length of high quality
(start - end)
330 (47 - 376)635 (77 - 711)
definitionCHROMAT_FILE: MSMg01no114_i15.b1 PHD_FILE: MSMg01no114_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:15 2005CHROMAT_FILE: MSMg01no114_i15.g1 PHD_FILE: MSMg01no114_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GGAGCCAACATCAAAGTAAATGGAAAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAGGAATATCACTTTTTGCAGATGATATGATAGTATAT
ATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAG
CTTCGGTGAAGTATCTGGATATAACACTAACTCAAACAAGTCAATGGTCT
TTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACCACA
CCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGAGTGACTCTAAC
TAAGGAAGTGAAAGATCTGTACGATAAAAACTTCAAGTCTCTGAAGAAAG
ACATCACAGAAGATCCCATAACACGGAAAGATCTCCCATGCTCATGGATT
GGCAGGATCCTATATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA
GATTCCATGCCATCCTCATCACAATTCTCACTCCATTCCCTCAACGAATT
ATCAAGGAGCCACTTTGCACATTCACCC
CCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCACTATGCCTCAAGATCTG
CATGCCAAGATCCAGGCCACAAACTTTTATTTACCCAGCCTGCAGATAAG
GATCACTGATGAGCCTTCCAATTCTGGATTGTAGTTCAGTTCAAATATAG
TCAGGTTGACAACCAGGAAAAGCCACTACAATATACATACATATATATTT
GAGATTAATATACTGATAAATATATATGGAGGCCCCATTAATATTAAAGT
ATTTGTAATTACCTTTATCTCTTCTATAGTCTAGCTAGCAGTATAAGGTC
AGATTTCTTTCCTGTTGTGAAAATATGTTAATGATAAACCTTATCATAAA
GGAGGACTTTATGTTCCTTAGTTCAAATCCCTATTTGACATCAACTCCTC
TTTATGTGTAATACTGTAAGACTTTCATGCCTATATGCTAATGACAAAAT
AGCAGAGGTGGACTTAATAGGAAACCTTGCCCTGAGCCTAGAACAGTCTA
CATGATACCCAGTGAAATGTGCCAAGGAAGTCTTTGATGTCCCCAGAATA
GAACAACAGCATAGCAGAAGTGTGTTGTGTTGGCCTCAGAAGTTTCCAAC
CAAAAACGCGTAAGAAACCATTAATGTGAGAAAAATCAAGCAGGAAAGTG
CATGGGTGGGGGGAGTAAAAAGGNAAGGAAGNNAAANNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_i15.g1 MSMg01no114_i15.g1 CHROMAT_FILE:
MSMg01no114_i15.g1 PHD_FILE: MSMg01no114_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:15 2005
         (635 letters)



>mm_chr11_16545325_16546359
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccactatgcctcaagatctgcatgccaagatccaggccacaaacttttatttaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagccactatgcctcaagatctgcatgccaagatccaggccacaaacttttatttaccc 260

                                                                       
Query: 61  agcctgcagataaggatcactgatgagccttccaattctggattgtagttcagttcaaat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctgcagataaagatcactgatgagccttccaattctggattgtagttcagttcaaat 320

                                                                       
Query: 121 atagtcaggttgacaaccaggaaaagccactacaatatacatacatatatatttgagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtcaggttgacaaccaggaaaagccactacaatatacatacatatatatttgagatt 380

                                                                       
Query: 181 aatatactgataaatatatatggaggccccattaatattaaagtatttgtaattaccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatactgataaatatatatggaggccccattaatattaaagtatttgtaattaccttt 440

                                                                       
Query: 241 atctcttctatagtctagctagcagtataaggtcagatttctttcctgttgtgaaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctcttctatagtctagctagcagtataaggtcagatttctttcctgttgtgaaaatat 500

                                                                       
Query: 301 gttaatgataaaccttatcataaaggaggactttatgttccttagttcaaatccctattt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gttaatgataaaccttatcataaaggatgactttatgttccttagttcaaatccctattt 560

                                                                       
Query: 361 gacatcaactcctctttatgtgtaatactgtaagactttcatgcctatatgctaatgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacatcaactcctctttatgtgtaatactgtaagactttcatgcctatatgctaatgaca 620

                                                                       
Query: 421 aaatagcagaggtggacttaataggaaaccttgccctgagcctagaacagtctacatgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatagcagaggtggacttaataggaaaccttgccctgagcctagaacagtctacatgat 680

                                                                       
Query: 481 acccagtgaaatgtgccaaggaagtctttgatgtccccagaatagaacaacagcatagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccagtgaaatgtgccaaggaagtctttgatgtccccagaatagaacaacagcatagca 740

                                                                       
Query: 541 gaagtgtgttgtgttggcctcagaagtttccaaccaaaaacgcgtaagaaaccattaatg 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 gaagtgtgttgtgttggcctcagaagtttccaaccaaaaacgagtaagaaaccattaatg 800

                                              
Query: 601 tgagaaaaatcaagcaggaaagtgcatgggtgggg 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 tgagaaaaatcaagcaggaaagtgcatgggtgggg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)