BAC Information

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BAC

Clone NameMSMg01-114K18
Chromosome11 (Build37)
Map Location 99,342,722 - 99,343,357
singlet/doubletsinglet
Overlap geneKrt23
Upstream geneIkzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20
Downstream geneKrt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K18.T7 (MSMg01no114_k18.b1)MSMg01-114K18.TJ (MSMg01no114_k18.g1)
ACCAG326495AG326496
length1,071739
length of high quality
(start - end)		---640 (72 - 711)
definitionCHROMAT_FILE: MSMg01no114_k18.b1 PHD_FILE: MSMg01no114_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:24 2005CHROMAT_FILE: MSMg01no114_k18.g1 PHD_FILE: MSMg01no114_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGCCACCCCCGTATCCACCCCCCAATACAAATCTTCTATTACCAGTTC
GTAAAAACCCGTACAGGGCCCGCCCCCCCCCCTCCCGCTTCGTCTCCACC
TAAACTAATCTGTACACCCCGCGACTCGCACTTTGCAGTAATAAAACCCA
TAAAGGCTATAGTACAATATATACTAGGACAGGGAACGGACAGACCATGT
CGATTTAATCGCACGTTCCGCTAAAATACATTTCCGTAATATTTAATATA
CCAACCGGTAGAAAAAAGCCGCTCCGTAGACGCCGCATAGACTAAGCCTA
TATTCTACACGCACCATTAAATGCCGTTAAACCCCCCCTCGCAATATTAA
CCCCCTATCCCCTCTTTATCCACCCACAAATAAATATATATCCCTCCCCC
TCTTATATATGCCCCGGGTTATCACCTATTTGCCGTTCTGCCGCCCCTCC
CTATATATTGGTCCTTTTTACTATCCCACCCGCTCGCCGGTTTCACCGCA
CCTAATTAAGCCGTTTACTCGTCTACAACGTCACCCGGCTATTTCCCCTC
CTTACGTTACCTCCTTTATACCGTCTCCTCAACCCATCCGACTATCGTAT
CGTATAACTAACTCCCGCCCGCTTTAGCACTCGTCGCCCCTTCTACAACC
GCGCTATCGAAATAATTCCGCGAATCCCTATTCTCTCGGCTTTCCATCTA
TTGCTTCCCCCCCCGAATTGTTTAAACGGCCCATGACACGACCTGCGCGC
AATTTATACCGCTTGGCTTTAACCTATATTCGTTTATGTCCCTCTGTTGC
GGCCCTTCCGCCCCCGCGCCATACCCGCCCTCATATTTCCGCTTCTACCA
TATTTACCCCCTGCGCCTTTACCGTCTTTTCCCACACGCTCTCTTCGCCT
GATTTTTTATAGAAAGCCGTGGTAGCGCAATAGTTTTATATATCGTCCCT
TCCCTTATCTTGTCGCCCCCGTCGCCACTAGCCGTCAACTACCCACCTTT
CAACGCCACCCGCAAGATGGTACTTCTATATTGACACTATCCGCGCCCTC
CGTGTTATCCTCTTCGCCCTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGAGGGAGAGAGGCTGCATCCTCAGAG
AGTGGTCTGATGGAGTGATGCCATGAACAATAGAGAATGCGTGGTTTTGA
GTGATCACACTCGAATGCAAGATGAGCAATGAGTAACTTTTTAAGGATAA
ACATGTTCACAAGCATTATCACACCATCACAACAGACATTCCCATATGCT
TAAAAATAACTTAGATGTTGATCTTAAACCAAGTGTCCAGTCATTTGGTA
AATATAGTCTAGGTTGTAAGTGATAGTCTCTGATATCCAATAGCGACAGG
CTGCCATTTTTTGAGGAAAATTCCGAAACTTTAAAACAAAGCATCTCAGG
TAGGGTTGATATCAAGGGTTGATATCCCTCACTCTGTCCAGACTCACCAC
CTGCTTTTCTGTGGAACTTTAATTTTAAGGAGATAAACCATAATCATATT
AGCTACCCACCCTTGAATGGCTGCTTCATTTTCAATGGGCTCTCATTAAC
ACTGTCCGGCTATCAAACCATATTCCTCTGATTGCAGGCACCCCCTCATT
CTCCCAGAGGTGTGTTTCCTTCTTTCCCCCCTTTTCTCACCCCTCATCTT
CACATTCCCCCTCTCAGCCCTTAGCTTCACTGAGGAATGAAAGCCATCTG
GAGGGAACACCAACAGTCACTCAGCCTTGTTTCCAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k18.g1 MSMg01no114_k18.g1 CHROMAT_FILE:
MSMg01no114_k18.g1 PHD_FILE: MSMg01no114_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:25 2005
         (640 letters)



>mm_chr11_99342522_99343561
          Length = 1040

 Score = 1207 bits (624), Expect = 0.0
 Identities = 633/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggagggagagaggctgcatcctcagagagtggtctgatggagtgatgccatgaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagggagagaggctgcatcctcagagagtggtctgatggagtgatgccatgaacaat 260

                                                                       
Query: 61  agagaatgcgtggttttgagtgatcacactcgaatgcaagatgagcaatgagtaactttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaatgcgtggttttgagtgatcacactcgaatgcaagatgagcaatgagtaactttt 320

                                                                       
Query: 121 taaggataaacatgttcacaagcattatcacaccatcacaacagacattcccatatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaggataaacatgttcacaagcattatcacaccatcacaacagacattcccatatgctt 380

                                                                       
Query: 181 aaaaataacttagatgttgatcttaaaccaagtgtccagtcatttggtaaatatagtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaataacttagatgttgatcttaaaccaagtgtccagtcatttggtaaatatagtcta 440

                                                                       
Query: 241 ggttgtaagtgatagtctctgatatccaatagcgacaggctgccattttttgaggaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttgtaagtgatagtctctgatatccaatagcgacaggctgccattttttgaggaaaat 500

                                                                       
Query: 301 tccgaaactttaaaacaaagcatctcaggtagggttgatatcaagggttgatatccctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccgaaactttaaaacaaagcatctcaggtagggttgatatcaagggttgatatccctca 560

                                                                       
Query: 361 ctctgtccagactcaccacctgcttttctgtggaactttaattttaaggagataaaccat 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgtccggactcaccacctgcttttctgtggaactttaattttaaggagataaaccat 620

                                                                       
Query: 421 aatcatattagctacccacccttgaatggctgcttcattttcaatgggctctcattaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcatattagctacccacccttgaatggctgcttcattttcaatgggctctcattaaca 680

                                                                       
Query: 481 ctgtccggctatcaaaccatattcctctgattgcaggcaccccctcattctcccagaggt 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ctgtccggctatcaaaccatattcctctgattgcaggcacccccccattctcccagaggt 740

                                                                       
Query: 541 gtgtttccttctttccccccttttctcacccctcatcttcacattccccctctcagccct 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtttccttctttccccctttttctcacccctcatcttcacattccccctctcagccct 800

                                               
Query: 601 tagcttcactgaggaatgaaagccatctggagggaa 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagcttcactgaggaatgaaagccatctggagggaa 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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