BAC Information

Click to search

BAC

Clone NameMSMg01-114M03
Chromosome11 (Build37)
Map Location 79,008,535 - 79,065,691
singlet/doubletdoublet
Overlap geneLOC100042697, Wsb1
Upstream gene4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1
Downstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114M03.T7 (MSMg01no114_m03.b1)MSMg01-114M03.TJ (MSMg01no114_m03.g1)
ACCAG326561AG326562
length701742
length of high quality
(start - end)		660 (42 - 701)637 (77 - 713)
definitionCHROMAT_FILE: MSMg01no114_m03.b1 PHD_FILE: MSMg01no114_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:31 2005CHROMAT_FILE: MSMg01no114_m03.g1 PHD_FILE: MSMg01no114_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,008,535 - 79,009,181)(79,065,055 - 79,065,691)
sequence
AATCATAATTTGCGGCGCTAAACGACTCCTATATCGAGAGATCCGCGGAA
TTCTCCATGTAGAGCAGGTTTCCCTTGAACTCACAGAGGCCTACCTGCCC
CTGCCTTTATGGTGTGCAGATCAAAGCTGCCCACTCCCACCCGTTTCTGT
GAATGAAAATATCTCTCATGAATGAAGATATCTAAGGACTGGAGAGATGG
CTCCATGGTTAAGAGCACTGACTGCTCTTTTAGAGGACCCTCGTTTGATT
TCCAGCACCCACATGGTTCTCACAACCATTTGTAGCTGCAGGTCTAGGGG
ACCCAATGCCCTCTTCTGGCCTCTGAGAGCACTAGACCCACACAAGGTAC
ACAGATTAAAGATAAAGAGTAGCAAGATGGCTTAGTGGATGAAAATGCTT
TCTGCCAAGCCTGGAGACATGAGTTCGATCCCCAGGACCTCTTAGAATAA
AAGAAGAGAACCAACTCCCCCCAACTTGCTCCTCCCTACCCTGACCTCCA
CATGTGGGTCATGCCATGTATGTGTGTATGCAGAAATAAATAAATTGTGA
TTTTTTTAAAAAAAATGTTTAAATGAATCCATTATTTATAAAAAGAGAAA
GATGAGGGACAAGGGTGTGCCTCAATTGGCAGAGCCCTTCCCTATATGCA
TCAAGTCCCAGGTTTGGTTTTTAGTGCCATATAAACCATGAGTGGTGACA
C

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTTTTGTTTTATTTTTTC
TTTGTTCTCCTTAAGGCAGAATTTCTCTGTGTAACCCGGGAACTCTGTAG
AGCAGGCTGGCCTCAAACTCAAGAGATTCTTGTCTGCCTTTGCCAACTGA
GTGATGGGATTAGGATTAAAGGCGTGTGCCACTACCATTCAGCAGATTTG
AGTATCTAAAAAAGAAAACATTGTTTAAGCAAAATAGTTTTATCTTAGTG
ATGGGTGTTAGGATATTTTCATACAAGAAGGAAAATTTTAAAATAATGTA
GGAGTTCTGAGTTGGAGCCTAGCCTGGTCTACAGAATGAGTTCCAGGACA
GCCAGGGCTACACAGGGAAACCCTGTCTCGGAAAACAAAAATTGCGTGTA
TTATGTGTGAAGAATAGTAAAAGTGTGTTCTCCCCTTGTGCCATGTGGCT
ACTAGGAATTGAAATCAAGTGGTCAAGCTTGGCAGCAGGTATGTGTACCC
ACTGAGTCATTTTGCTAGCCCTCCAGCTCTTCCCAGGCTGACCATGTAGC
TGAGGTGACCTTAAAATTCCAATTCTTTACCTGGTTTGCACTAATGATGA
AGATAGAAACCAGAGCTTCTTGTAGATTAGCAAGACAACCTATGCCTAAC
GATTTATAGTTCTTCGAAGGTGATGATAATCTTAATTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_m03.b1 MSMg01no114_m03.b1 CHROMAT_FILE:
MSMg01no114_m03.b1 PHD_FILE: MSMg01no114_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:31 2005
         (660 letters)



>mm_chr11_79008329_79009385
          Length = 1057

 Score = 1104 bits (571), Expect = 0.0
 Identities = 630/651 (96%), Gaps = 4/651 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctccatgtagagcaggtttcccttgaactcacagaggcctacctgcccctgcct 65
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 207 ggaattctccatgtagagcaggtttcccttgaacttacagaggtctacctgcccctgcct 266

                                                                       
Query: 66  ttatggtgtgcagatcaaagctgcccactcccacccgtttctgtgaatgaaaatatctct 125
           |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 267 ttatggtgtggagatcaaagctgcccattcccacccgtttctgtgaatggaaatatctct 326

                                                                       
Query: 126 catgaatgaagatatctaaggactggagagatggctccatggttaagagcactgactgct 185
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catgagtgaagatatctaaggactggagagatggctccatggttaagagcactgactgct 386

                                                                       
Query: 186 cttttagaggaccctcgtttgatttccagcacccacatggttctcacaaccatttgtagc 245
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttttagaggacccaggtttgatttccagcacccacatggttctcacaaccatttgtagc 446

                                                                       
Query: 246 tgcaggtctaggggacccaatgccctcttctggcctctgagagcactagacccacacaag 305
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tccaggtctaggggacccaatgccctcttctggcctctgagagcactagacccacacaag 506

                                                                       
Query: 306 gtacacagattaaagataaagagtagcaagatggcttagtggatgaaaatgctttctgcc 365
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 507 gtacacagattaaagataaagagtagcaagatggcttagtggatgaaaatgcttgctgcc 566

                                                                       
Query: 366 aagcctggagacatgagttcgatccccaggacctcttagaataaaagaagagaaccaact 425
           |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||| 
Sbjct: 567 aagcctggagacatgagttcaatttccaggacctcttagagtaaaagaagagaaccaac- 625

                                                                       
Query: 426 ccccccaacttgctcctccctaccctgacctccacatgtgggtcatgccatgtatgtgtg 485
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 626 ccccccaacttgctcctccccaccccgacctccacatgtgggtcatgccatgtatgtgtg 685

                                                                       
Query: 486 tatgcagaaataaataaattgtgatttttttaaaaaaaatgtttaaatgaatccattatt 545
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 686 tatgcagaaataaataaattgtgatttttt---aaaaaatgtttaaatgaatccattatt 742

                                                                       
Query: 546 tataaaaagagaaagatgagggacaagggtgtgcctcaattggcagagcccttccctata 605
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 743 tataaaaagagaaagatgagggacaagggtgtgcctcaattggcagagcccttccctaaa 802

                                                              
Query: 606 tgcatcaagtcccaggtttggtttttagtgccatataaaccatgagtggtg 656
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgcatcaagtcccaggtttggtttttagtgccatataaaccatgagtggtg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1057
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1047
Effective search space:   680550
Effective search space used:   680550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no114_m03.g1 MSMg01no114_m03.g1 CHROMAT_FILE:
MSMg01no114_m03.g1 PHD_FILE: MSMg01no114_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:31 2005
         (637 letters)



>mm_chr11_79065051_79066087
          Length = 1037

 Score = 1208 bits (625), Expect = 0.0
 Identities = 634/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgttttttgttttattttttctttgttctccttaaggcagaatttctctgtgtaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttttgttttttgttttattttttctttgttctccttaaggcagaatttctctgtgtaacc 582

                                                                       
Query: 61  cgggaactctgtagagcaggctggcctcaaactcaagagattcttgtctgcctttgccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 581 cgggaactctgtagagcaggctggcctcaaactcaagagattcttgtctgcctctgccaa 522

                                                                       
Query: 121 ctgagtgatgggattaggattaaaggcgtgtgccactaccattcagcagatttgagtatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctgagtgatgggattaggattaaaggcgtgtgccactaccattcagcagatttgagtatc 462

                                                                       
Query: 181 taaaaaagaaaacattgtttaagcaaaatagttttatcttagtgatgggtgttaggatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taaaaaagaaaacattgtttaagcaaaatagttttatcttagtgatgggtgttaggatat 402

                                                                       
Query: 241 tttcatacaagaaggaaaattttaaaataatgtaggagttctgagttggagcctagcctg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 401 tttcatacaagaaggaaaattttaaaataatgtaggagttctgagttggagcctggcctg 342

                                                                       
Query: 301 gtctacagaatgagttccaggacagccagggctacacagggaaaccctgtctcggaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtctacagaatgagttccaggacagccagggctacacagggaaaccctgtctcggaaaac 282

                                                                       
Query: 361 aaaaattgcgtgtattatgtgtgaagaatagtaaaagtgtgttctccccttgtgccatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaaaattgcgtgtattatgtgtgaagaatagtaaaagtgtgttctccccttgtgccatgt 222

                                                                       
Query: 421 ggctactaggaattgaaatcaagtggtcaagcttggcagcaggtatgtgtacccactgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggctactaggaattgaaatcaagtggtcaagcttggcagcaggtatgtgtacccactgag 162

                                                                       
Query: 481 tcattttgctagccctccagctcttcccaggctgaccatgtagctgaggtgaccttaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tcattttgctagccctccagctcttcccaggctgaccatgtagctgaggtgaccttaaaa 102

                                                                       
Query: 541 ttccaattctttacctggtttgcactaatgatgaagatagaaaccagagcttcttgtaga 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 101 ttccaattctttacctggtttgtactaatgatgaagatagaaaccagagcttcttgtaga 42

                                                
Query: 601 ttagcaagacaacctatgcctaacgatttatagttct 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 41  ttagcaagacaacctatgcctaacgatttatagttct 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |