Query= MSMg01no114_o20.b1 MSMg01no114_o20.b1 CHROMAT_FILE:
MSMg01no114_o20.b1 PHD_FILE: MSMg01no114_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
(414 letters)
>mm_chr11_68939189_68940002
Length = 814
Score = 787 bits (407), Expect = 0.0
Identities = 410/411 (99%)
Strand = Plus / Plus
Query: 4 ggaattctggtgttctggtgcccatttctggtttggaaataggaggaaaaggctctaggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggtgttctggtgcccatttctggtttggaaataggaggaaaaggctctaggt 263
Query: 64 ggaatctggggaatgggtgaacatgggcttcaggacattagtcaagccactgatcagaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaatctggggaatgggtgaacatgggcttcaggacattagtcaagccactgatcagaca 323
Query: 124 caaagtagtgtcccaacacgggtcacctcctccctgtcttccacttgccacttggtccct 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaagtagtgtcccaacacgcgtcacctcctccctgtcttccacttgccacttggtccct 383
Query: 184 ccttccttattccctccctcaccaatgggcccaggcttctgatatccatctggatgagcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttccttattccctccctcaccaatgggcccaggcttctgatatccatctggatgagcc 443
Query: 244 agccagagggacaggctgtgtcagaggcatgcaaacaagtattagggtgcaagtcggtgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agccagagggacaggctgtgtcagaggcatgcaaacaagtattagggtgcaagtcggtgg 503
Query: 304 gtggggatagtactcccgagctaccagcggagctgccgtgagagatcgagaaagagagag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtggggatagtactcccgagctaccagcggagctgccgtgagagatcgagaaagagagag 563
Query: 364 agcgcgcgcgagcccaggaacgtcctagagctggatccttcctcaggccca 414
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcgcgcgcgagcccaggaacgtcctagagctggatccttcctcaggccca 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_o20.g1 MSMg01no114_o20.g1 CHROMAT_FILE:
MSMg01no114_o20.g1 PHD_FILE: MSMg01no114_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
(566 letters)
>mm_chr11_68990653_68991618
Length = 966
Score = 1065 bits (551), Expect = 0.0
Identities = 563/567 (99%), Gaps = 2/567 (0%)
Strand = Plus / Minus
Query: 1 atttaaatgcactgtaagagaacaaagactagttccaaggagaagcag-aaaaaaaaaac 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 593 atttaaatgcactgtaagagaacaaagactagttccaaggagaagcagaaaaaaaaaaac 534
Query: 60 agagtcttattcttaaattaaaaaaaaataagaaaggaatattaagtctgcgtcagcaac 119
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agagtcatattcttaaatt-aaaaaaaataagaaaggaatattaagtctgcgtcagcaac 475
Query: 120 cttcgcagcaaatgttgggaatcttgttagtcagatggcgaggggcttcagccagattcc 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 474 cttcgcagcaaatgttgggaatcttattagtcagatggcgaggggcttcagccagattcc 415
Query: 180 agggagacaggctcctttccctttccatgcccctgtaacatcctctaaacactgatgctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agggagacaggctcctttccctttccatgcccctgtaacatcctctaaacactgatgctg 355
Query: 240 caccactgaagagccgcccacagcccatcaaccttctggcccgtatgctatagcatcacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caccactgaagagccgcccacagcccatcaaccttctggcccgtatgctatagcatcacc 295
Query: 300 aagcagatgggtaggagtgattaaaatctcaggggaaaagccggtgaccctcgcctccct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagcagatgggtaggagtgattaaaatctcaggggaaaagccggtgaccctcgcctccct 235
Query: 360 ccttctgtaaaagaatgttaaaaccttattaccagggctggagagatggttcagcagtta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccttctgtaaaagaatgttaaaaccttattaccagggctggagagatggttcagcagtta 175
Query: 420 agatcatctaagaaccgatcagtttgactattccagaggacccaggttcaattcccacca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 agatcatctaagaaccgatcagtttgactattccagaggacccaggttcaattcccacca 115
Query: 480 tctacatagcagcccacaactgtctataactctagttccaggcgatccaatgccctcttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tctacatagcagcccacaactgtctataactctagttccaggcgatccaatgccctcttc 55
Query: 540 tggcctctgcaggcaccagacacatac 566
|||||||||||||||||||||||||||
Sbjct: 54 tggcctctgcaggcaccagacacatac 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
