Query= MSMg01no115_g10.b1 MSMg01no115_g10.b1 CHROMAT_FILE:
MSMg01no115_g10.b1 PHD_FILE: MSMg01no115_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:20 2005
(590 letters)
>mm_chr11_39703655_39704644
Length = 990
Score = 940 bits (486), Expect = 0.0
Identities = 547/574 (95%), Gaps = 15/574 (2%)
Strand = Plus / Minus
Query: 31 cattcttagtgaaaacttaaatcaagtttgattcctataacaaattttagagaagggatt 90
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 990 cattcttagtgaaaacttaaatcaagtttgattcctataacaaattttagagaaggaatt 931
Query: 91 tttcgcttcctgtgctctttgttctcacctcctcaggggccaataccaactacatgatgg 150
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 930 tttcgcttcctgtgctctttgttctcacctcctcaggggccactaccaactgcatgatgg 871
Query: 151 tagaaaactgaacacagagatatcagaggactactggattcctgtctcctttgttcctat 210
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 870 tagaaaactgaacacagagatatcagaggactactggatccctgtctcctttgttcctat 811
Query: 211 tg-------tc--tat----tgttttctacagcatatgataaaagacaaatatcctatcc 257
|| || ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 810 tgccatgactccttatatcatgttttctacagcatatgataaaatacaaatatcctatcc 751
Query: 258 tttagtgaaagcagtggtgatattgttactagcgctgaagcatttgagccccacccactc 317
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 750 tttagtgaaagcaggggtgatattgttactagcgctgaagaatttgagccccacccactc 691
Query: 318 ttacagcgagttcactttaggagtaaggatgtgagcatttttccaatcctcacacctgat 377
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 690 ttacagcgagttcactttaggagtaaggatgtgagcatttttccaatccttagat-tgat 632
Query: 378 tttcatagagctatttttccaatgccagaacagaagtggccttagagcagtggatttatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tttcatagagctatttttccaatgccagaacagaagtggccttagagcagtggatttatg 572
Query: 438 tttc-gtaatgaatatgggttagttcacaatctcatccaagtacatgttcatatcatctt 496
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 571 tttccgtaatgaatatgggttagttcacattctcatccaagtacatgttcatatcatctt 512
Query: 497 tatgacccacataatacatcatggagctatgggatggaaggaaactaattaacctttaat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tatgacccacataatacatcatggagctatgggatggaaggaaactaattaacctttaat 452
Query: 557 gagatgagggctctgtaggacagttggcattgtg 590
||||||||||||||||||||||||||||| ||||
Sbjct: 451 gagatgagggctctgtaggacagttggcactgtg 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_g10.g1 MSMg01no115_g10.g1 CHROMAT_FILE:
MSMg01no115_g10.g1 PHD_FILE: MSMg01no115_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:20 2005
(612 letters)
>mm_chr11_39611411_39612422
Length = 1012
Score = 1100 bits (569), Expect = 0.0
Identities = 606/625 (96%), Gaps = 13/625 (2%)
Strand = Plus / Plus
Query: 1 ttgatttacaa-caagcaagattgattttaatttttaaaatacttgaagagtgctcagtg 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttgatttacaaacaagcaagattgattttaatttttaaaatacttgaagagtgctcagtg 247
Query: 60 tgtatttgccaatccgtcccaggcctcctacattcaaaactcctccacaagtcaaattag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtatttgccaatccgtcccaggcctcctacattcaaaactcctccacaagtcaaattag 307
Query: 120 tggatgatcacccataaatagataattggtacaacacaagagtctaataattgaacatta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tggatgatcacccataaatagataattggtacaacacaagagtctaataattgaacatta 367
Query: 180 gtcatgcctactgaacagaatgagcatagttcattactttcaaaattttgattagtgaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtcatgcctactgaacagaatgagcatagttcattactttcaaaattttgattagtgaat 427
Query: 240 taatatgaacatcataaaaaccctcataaatttgtttgacttctttaaatattgtttgta 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taatatgaacatcataaaacccctcataaatttgtttgacttctttaaatattgtttgta 487
Query: 300 ttctgaatgaggaaaaaacatgccaatacaattaagatataacaaaa---ttatttcaat 356
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 488 ttctgaatgaggaaaaaacatgccaatacaattaagatataaaaaaaaatttattccaat 547
Query: 357 aaaggtaacttcaaatttgcagttttcttattgtagcacaaaaaaa---------taatg 407
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 548 aaaggtaacttcaaatttgcagttttcttattgtagcacaaaaaaaaaataataataatg 607
Query: 408 aaggttcgaaaaagacataaaatcttcacgaagtatgtagtcctaaatttaaatgtatca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaggttcgaaaaagacataaaatcttcacgaagtatgtagtcctaaatttaaatgtatca 667
Query: 468 ttattgctgttgttatacgtagctaagagagaaaattttgacaggcagcgttatggttta 527
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 668 ttattgctgttgttatacgtagctaagagagaaaattttggcaggcagcgttatggttta 727
Query: 528 gatttcccaaagatcatgtcttggccccatatggaggtggtggaactaataggaaatgag 587
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gattccccaaagatcatgtcttggccccatatggaggtggtggaactaataggaaatgag 787
Query: 588 gttttactggaacaagataagtaat 612
| |||||||||||||||||||||||
Sbjct: 788 gctttactggaacaagataagtaat 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
