BAC Information

Click to search

BAC

Clone NameMSMg01-115J14
Chromosome11 (Build37)
Map Location 86,333,359 - 86,424,334
singlet/doubletdoublet
Overlap geneRps6kb1, Tubd1, LOC100043687, Tmem49
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik
Downstream genePtrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115J14.T7 (MSMg01no115_j14.b1)MSMg01-115J14.TJ (MSMg01no115_j14.g1)
ACCAG327188AG327189
length722704
length of high quality
(start - end)
239 (64 - 302)315 (83 - 397)
definitionCHROMAT_FILE: MSMg01no115_j14.b1 PHD_FILE: MSMg01no115_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:35 2005CHROMAT_FILE: MSMg01no115_j14.g1 PHD_FILE: MSMg01no115_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,333,359 - 86,333,597)(86,424,020 - 86,424,334)
sequence
GCTAAACGAANACCACTTCCAAAACACCGNGGAANTCACCAGTTTTGCAA
CAAACTCACATGNCCCTGGAAAGGAGCATGGGAGGCAGCAGTACTAACCA
CTGAGATACTCGAGGATGAGGTAGAGCTTCCCTCCGGTCTGAAAGGCATA
AATCAGGTCCACAATGAAAGGGTGTTTCACTTCCTCCAGAATGTTCCGCT
CTGCTTTCGTGTGGGCCGTGTCCTTAGCATTCCTCACTATCATTGCCTAA
AGGAAAAGAGATGGTCTATAAGAACAAAATAGTCAACATTTTGATCCTAT
GGTAACTGGTTAAATCTACTTTATGCTTTTCAGGCTAATACTATATAGTT
TCTACCAGAAACGGAGGTGGGTGAGGGTAATGGAGGCTACTCACTGTTTA
TAAATATCGAAATTTGCTCGGGTTTTGTAGTAAATATGTAAATGAAAACC
AAGACAGGTTTTTCTAGACATATGTAAACAGATCAAGTTTATGCATATAT
TCACTTACAGGTGAGACCTTAGTGCGCCCCCAACTTTAGGCCAAGAGAGT
AGGAATAAAATAAGGAATCCTGTCCTTGTAGCCCAGAGTATCAAGGGAAA
AGATGTCTATGAAAGCAAGAACAGAATGCTAAGAGTAAGTATTGTATGTG
CTCTCAACCTGGCAAGATGCTTTCCTGAGTGACCAGACAACAAAACGGTC
AAGTTAAAGTGAAATGTGCGCG
ACTTTTNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTTTGTATTCTCA
GAATCCCCATAAAACATCTGGGTGGTGGCGTGCACTGTAATATCAGTGAT
GGCAGAATGGGAGATGAAGACAGATGGATCACTGGTACACACAGACGTCA
CACACGTAAACCAAAATGTCCACGCGTCTGAATTACTGTTGTTGATCTTG
GAAGTACTAGACATTTCCCCCGTGCAGCCTCTGTGACAACAGTGACAACA
GATATAAAGTGCCCAAGGAGGCTACCTCACAAGGCTGATAGGATTTATGA
GAATATTTGTGAAAATCACACGCAACACAGCCCTGAGAGAAGTTGGGTCG
AGGGTATCAGAAGTTCAGAGTCGTCCCTGGTGACACAGCAGATATGAGGG
TTTGAGGTCAGCCTAGGATATCTCCTAAGTAAAGTGTGCATTGGTGAGAT
GACTCAGCACGTAAAGGCACTTGTGGCCTGAGGATGCATAACCTGATTTC
AGTTCCCAGAATCCAAAGAAAGGGAGAATATGCCTCACGTCCTCCTGACA
TTCACATGCATGTGTGCGCAAACACACACCACATAATATATTTTTGCAAG
AACATTATACTGCTTCTCACATAAATGCTCATTTATTTTCACCGTGCTTT
ATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_j14.b1 MSMg01no115_j14.b1 CHROMAT_FILE:
MSMg01no115_j14.b1 PHD_FILE: MSMg01no115_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:35 2005
         (239 letters)



>mm_chr11_86333159_86333797
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctggaaaggagcatgggaggcagcagtactaaccactgagatactcgaggatgaggta 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctggaaaggagcgtgggaggcagcagtactaaccactgagatactcgaggatgaggta 260

                                                                       
Query: 61  gagcttccctccggtctgaaaggcataaatcaggtccacaatgaaagggtgtttcacttc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctttcctccggtctgaaaggcataaatcaggtccacaatgaaagggtgtttcacttc 320

                                                                       
Query: 121 ctccagaatgttccgctctgctttcgtgtgggccgtgtccttagcattcctcactatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccagaatgttccgctctgctttcgtgtgggccgtgtccttagcattcctcactatcat 380

                                                                      
Query: 181 tgcctaaaggaaaagagatggtctataagaacaaaatagtcaacattttgatcctatgg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctaaaggaaaagagatggtctataagaacaaaatagtcaacattttgatcctatgg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no115_j14.g1 MSMg01no115_j14.g1 CHROMAT_FILE:
MSMg01no115_j14.g1 PHD_FILE: MSMg01no115_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:35 2005
         (315 letters)



>mm_chr11_86423820_86424534
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagtttgtattctcagaatccccataaaacatctgggtggtggcgtgcactgtaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attcagtttgtattctcagaatccccataaaacatctgggtggtggcgtgcactgtaata 456

                                                                       
Query: 61  tcagtgatggcagaatgggagatgaagacagatggatcactggtacacacagacgtcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcagtgatggcagaatgggagatgaagacagatggatcactggtacacacagacgtcaca 396

                                                                       
Query: 121 cacgtaaaccaaaatgtccacgcgtctgaattactgttgttgatcttggaagtactagac 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 395 cacgtaaaccaaaatgtccacgcgcctgaattactgttgttgatcttggaagtactagac 336

                                                                       
Query: 181 atttcccccgtgcagcctctgtgacaacagtgacaacagatataaagtgcccaaggaggc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atttccccggtgcagcctctgtgacaacagtgacaacagatataaagtgcccaaggaggc 276

                                                                       
Query: 241 tacctcacaaggctgataggatttatgagaatatttgtgaaaatcacacgcaacacagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tacctcacaaggctgataggatttatgagaatatttgtgaaaatcacacgcaacacagcc 216

                          
Query: 301 ctgagagaagttggg 315
           |||||||||||||||
Sbjct: 215 ctgagagaagttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)