BAC Information

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BAC

Clone NameMSMg01-115O16
Chromosome11 (Build37)
Map Location 30,471,718 - 30,472,317
singlet/doubletsinglet
Overlap geneAcyp2, LOC666452
Upstream gene1700034F02Rik, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, LOC654445
Downstream geneLOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115O16.T7 (MSMg01no115_o16.b1)MSMg01-115O16.TJ (MSMg01no115_o16.g1)
ACCAG327427AG327428
length742705
length of high quality
(start - end)
604 (37 - 640)618 (88 - 705)
definitionCHROMAT_FILE: MSMg01no115_o16.b1 PHD_FILE: MSMg01no115_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:59 2005CHROMAT_FILE: MSMg01no115_o16.g1 PHD_FILE: MSMg01no115_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAG
ACTTAGAGCATAGTACAGCGTATGGTTTGTGTGTGGGTGGTGCTATGGCA
GTATTATAGGAGGAAATCTGTCAGTGTTAGGATACTGTAAGTCAATGGAA
GATTCTAGATGTAGGTAGTACAGGAGCAGTTTCTCATTGCCTGATACTAT
GAGCTAATGACACTGTGAGTGCTGGATTTGAAGTAGTTATGTGCTTAATT
TTCTTGAGCAAGAAATGCATGACAAAGTGAAGTGCTTCACCTAGCTCCCT
CCGCTCAGCAGCAGTCAGGTGGCTGGGCTCTGTGAGGTCACAGTGGTTTG
CTTGCTTGCTGCAGCCTGTTAGGTGTTCATGGAGGAACTGATCTCTGTCT
TAGGCGCGCACTTTGCTTCCACGCCTGCTTTTATATCGTCCACAAGGCCG
GTTTGTACTTTCTTGAAACAAATAACCAGTCGATATACACAAATATGCTT
TTAAAAAGTGAGCCTTTTTAAATGAATCAGAATTTTGTCTGACTCATGAG
GCGGGAGCGATGGTAGAGAGAGGTTCCTCTCTGTGCATAAGCATTTGGCT
TGTTGAGATCTCTGCATTTTATAAATGCTTCCTACTGAGAAAGCATTTCT
TAAGTCTCTGCTTGTACCAGGTTATTTTTGCTGGCGTGCGCAAAGGGTTG
TCCTCTTCTCCTCTTCCTTCCCTCCCTCTTATTTACCCATTC
TTTTNCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTTTGAATAC
TTTTTCTACAGTTGTTTGTCACTGTTTGGAAAGGATTAAAAGGTGTGGTC
TTATTGTTACTTGGGTCAGATTTTGGAGTTTCAAAAGACTTGTTCAATTC
CCACTGTGCTATTGTTCTGCCTCCTACTTGTGGGTCAAGCTATGAATTCT
CAGCTGTTTCCGCTACTCTGCCTTTACTCTGCCATCAGTGACTAACCATC
GGAAACTCTAATCCTAACTAAATGCTTTCTTGTCTAAGTTCATTTTTGTG
TTCTGTCACAGCAATAGAAAGATAACTAATATAAGGAGCTAACTGACTAC
TTTCTAATTAGATTTAATCCCCACTCCATGAATCAGAAGCCATACCTGGC
ACCATTAATGGGGCTAAGAACATGTAACCAGATACATTAGAGGCCCTGGA
GAACCTATTATTTTGCTAAGTGGGCATAATATTAAAATGATTCCTAATGA
CTAACTGCTATACCTATAGATCTTTGCATCTCTCATAAGCTACCTCTTGC
AATACCAGGCAGTTAACAGAGACCCACAATTGGCCTATGTGCTGTGAATC
AGAGACTTCAAAATAATCAGTTCTAAGTGGGACATCTGTACTGACGGCTC
AGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_o16.b1 MSMg01no115_o16.b1 CHROMAT_FILE:
MSMg01no115_o16.b1 PHD_FILE: MSMg01no115_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:59 2005
         (604 letters)



>mm_chr11_30471514_30472517
          Length = 1004

 Score = 1152 bits (596), Expect = 0.0
 Identities = 599/600 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagacttagagcatagtacagcgtatggtttgtgtgtgggtggtgctatggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaattcagagacttagagcatagtacagcgtatggtttgtgtgtgggtggtgctatggca 745

                                                                       
Query: 65  gtattataggaggaaatctgtcagtgttaggatactgtaagtcaatggaagattctagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtattataggaggaaatctgtcagtgttaggatactgtaagtcaatggaagattctagat 685

                                                                       
Query: 125 gtaggtagtacaggagcagtttctcattgcctgatactatgagctaatgacactgtgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtaggtagtacaggagcagtttctcattgcctgatactatgagctaatgacactgtgagt 625

                                                                       
Query: 185 gctggatttgaagtagttatgtgcttaattttcttgagcaagaaatgcatgacaaagtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctggatttgaagtagttatgtgcttaattttcttgagcaagaaatgcatgacaaagtga 565

                                                                       
Query: 245 agtgcttcacctagctccctccgctcagcagcagtcaggtggctgggctctgtgaggtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgcttcacctagctccctccgctcagcagcagtcaggtggctgggctctgtgaggtca 505

                                                                       
Query: 305 cagtggtttgcttgcttgctgcagcctgttaggtgttcatggaggaactgatctctgtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagtggtttgcttgcttgctgcagcctgttaggtgttcatggaggaactgatctctgtct 445

                                                                       
Query: 365 taggcgcgcactttgcttccacgcctgcttttatatcgtccacaaggccggtttgtactt 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taggcgtgcactttgcttccacgcctgcttttatatcgtccacaaggccggtttgtactt 385

                                                                       
Query: 425 tcttgaaacaaataaccagtcgatatacacaaatatgcttttaaaaagtgagccttttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttgaaacaaataaccagtcgatatacacaaatatgcttttaaaaagtgagccttttta 325

                                                                       
Query: 485 aatgaatcagaattttgtctgactcatgaggcgggagcgatggtagagagaggttcctct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgaatcagaattttgtctgactcatgaggcgggagcgatggtagagagaggttcctct 265

                                                                       
Query: 545 ctgtgcataagcatttggcttgttgagatctctgcattttataaatgcttcctactgaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtgcataagcatttggcttgttgagatctctgcattttataaatgcttcctactgaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)