BAC Information

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BAC

Clone NameMSMg01-116D22
Chromosome11 (Build37)
Map Location 6,486,281 - 6,486,569
singlet/doubletsinglet
Overlap geneCcm2
Upstream geneAnkrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, LOC665327
Downstream geneAB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D22.T7 (MSMg01no116_d22.b1)MSMg01-116D22.TJ (MSMg01no116_d22.g1)
ACCAG327672AG327673
length719715
length of high quality
(start - end)
289 (80 - 368)281 (73 - 353)
definitionCHROMAT_FILE: MSMg01no116_d22.b1 PHD_FILE: MSMg01no116_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:27 2005CHROMAT_FILE: MSMg01no116_d22.g1 PHD_FILE: MSMg01no116_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATTATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGTCATACCAGATTAGAGTGAGATCTTAACTAAAAA
TAAGCCTTTGTAAGTTAAATAATTCAAGAGGAGCTTGTTCAGATGAACTT
GGTAATCAAACTATCTTCTGTGTGAGGGCAAGTATCTACCACATGCATCT
ACATATGTGTGTAGATGTGACTGGGCTGGGCAAGCAAGTGTGTTCCAGTC
TATGGGAGTGTGATATATGCAACTGTGTGTATATAGTATGTGTGATATGG
GACGTGTGAGTTGTATAAGAGAAAATATGGTATGTAAGTATGCTGGGCAG
GGAATGAGCCATTCTACATATACAAGGCAGACCAGCTAAAATCACTTCAC
AACCCCAGCTGCCTGGAGCTGACCATAGCACTTGAACTAGCATCATAAGA
CACTCTTCCCATACCGTGAAAAAGCCTAGACCATCTGACTCCTTGTGCCC
TTGTCACCCATCCCTCTGGAGCTGGCTTTGGGGTCATCCTAACCACTCGG
AGTGATCCACCAAGCCTAGGCCAGTGTGCCTGTGCTGACTCAGTTATTGC
ATGTTCTCTCCTCCATTTCCACTGCCGTATACGTTATCGTGTACACTTAA
CTTGTATTATGGCTTCCCCTGTGTACCTTGGTTTGATGAGCACCTTTTTG
TCAATACTACCCGGCTTAT
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACATGGTGGCTCGC
AACCATCTGTAATGGGGTCTGACACCCTCTTCTGGTATGTCTGAGGACAG
CAACAATGTATTCATATATGAAATAAATAAATCTCTAAAATAAAAAAGGA
AGGCTCACAGGCTCTACCTCGTTCTTCCGACTGATTACTTTGGAGTGAGG
GGTGAGAATAAAGAACGTGTTCTGGCCGGGCGTGGTGGCTCACACCTTTA
ACCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCA
GTCTGTTCTACCCACCGCGTTCTAGGACAGCCAGGGCTATACAGAGAAAC
CCTGTCTCGAAAAACCAAAAAAAAAAAAATATAAAAAAATCCCAGGATTT
TCCCTCCTGAATGTTTCCGCCTTGCCTCCTTCTGGCCTATGATGCCCGCC
GAGGTTGCCAGGAACCCAAACTGCCTTAATGGGAGCAGGTTGTTCTGCCA
TTTATTTCCCTAGGTCTTTGAGTTGAACATCCCACCTAGGGCTGATTCTC
TCCCCCCCTTGTCTAACCTGCCTGTGAAATTTCACAAACATCTTCCAAGC
TACTGGTGATCATACACTGATCCCCGAATTTTATCAATGTACCCCGTGGC
TCTCTTCCGGACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d22.b1 MSMg01no116_d22.b1 CHROMAT_FILE:
MSMg01no116_d22.b1 PHD_FILE: MSMg01no116_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:27 2005
         (289 letters)



>mm_chr11_6486081_6486769
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtgagatcttaactaaaaataagcctttgtaagttaaataattcaagaggagcttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gagtgagatcttaactaaaaataagcctttgtaagttaaataattcaagaggagcttgtt 430

                                                                       
Query: 61  cagatgaacttggtaatcaaactatcttctgtgtgagggcaagtatctaccacatgcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cagatgaacttggtaatcaaactatcttctgtgtgagggcaagtatctaccacatgcatc 370

                                                                       
Query: 121 tacatatgtgtgtagatgtgactgggctgggcaagcaagtgtgttccagtctatgggagt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 369 tacatatgtgtgtagatgtgactgggctgggcaggcaagtgtgttccagtctatgggagt 310

                                                                       
Query: 181 gtgatatatgcaactgtgtgtatatagtatgtgtgatatgggacgtgtgagttgtataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtgatatatgcaactgtgtgtatatagtatgtgtgatatgggacgtgtgagttgtataag 250

                                                            
Query: 241 agaaaatatggtatgtaagtatgctgggcagggaatgagccattctaca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agaaaatatggtatgtaagtatgctgggcagggaatgagccattctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)