BAC Information

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BAC

Clone NameMSMg01-116E14
Chromosome11 (Build37)
Map Location 41,006,743 - 41,162,166
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116E14.T7 (MSMg01no116_e14.b1)MSMg01-116E14.TJ (MSMg01no116_e14.g1)
ACCAG327704AG327705
length718715
length of high quality
(start - end)
542 (75 - 616)161 (83 - 243)
definitionCHROMAT_FILE: MSMg01no116_e14.b1 PHD_FILE: MSMg01no116_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:30 2005CHROMAT_FILE: MSMg01no116_e14.g1 PHD_FILE: MSMg01no116_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,161,625 - 41,162,166)(41,006,743 - 41,006,903)
sequence
CCCCCAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCAATGCCCATTTAACTCTTCTAGAAATTTGTTATTTA
TTCTTAAAATAGAAACACCGCTCTACCTTGTACACAATGATGAATGATGA
AAGCATACAGCCCAATATATTTCCATGAATGAGTGGGTTTGATTTCCTTT
TTGGCAATGGGAAACTCAAACCATTAGACTAAATGTGTTCATTCAACAAA
AATATGTCTTGTTTGATAGAGTAATGTTCTGGGCCAACAAAAGAGTCTTA
CAAAATTTGAAAAGATTTTCAAGGAAGTGAATGAGATATTCATATCTTAA
TGGAAATAAAACTACTCACTTTTAAAAAGGATATACTTAGAACTTCTTGT
CTGGGTTATAATAATGCTATGCAGATGTTTCACATTCCCTCTTAGTTTTA
AGAAATTAAAGTTACTCAGTCATTCTATAGTCCTCTAGAATTACCAGTTT
GTAGATAAATAGAAATCAGCTTTAAATTGTTCATCAAGTATTAGAGCTGT
ACTGGAGAGTTCCTATGCAGGACACATATTCAATGACAGTGACCCAGATT
TTGAAATGGACAAACATGAATGAAACTGTACTCAGCTGTTGTATTCCAAT
AGAGAAGGACCTGCTCTAATTTAGGACAGTATGCTGAGAAGACATAATGT
TTTCATTATGAGTTTGAA
NNNNCCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATCCAACTCTATTAAGAA
CATGGAATGGGACCAGCTACATAACACTGTATCATACTGAACTTCAAAAG
ATGTTTGGTCTTTGGAATACTGGTTTAAATATAATGAATGGGCTGTCTGT
CAGTGAATGTCTGGTAGGAATACTGTAAGGTGATGTATTTTAGATTCCAA
TTCAGCAAAGGATCAGAATTTATCTCTGTAGCAGTATGACTTCTCCCAGA
TTTCTAAGGTGAGGTTTAATCCTGGGGGTGATGGCGTTCACGAGTAGTGC
CCTCAGGTCATGATCAGGCCAGGAAGGCTGCTCTTCCTAGAGATTATTAT
AAAAGTGCTCGAAGGACGAGATGCTCCACTTGTGCCCTTCTGGCATGTGA
GGACCTAGATAAGCACCAATGATGAGCAGCTTGAACAATGCTCTGAAGTT
GACTGTGCCATGTCTCATACATCCCACTTTTCACAGACATGAGAGATAAG
CTCGCACAGGCAATTCCCTATTCTGAGGGATGGTAGGGCTGTTAACCTAA
TCTTTGGCAACCGTCGTCTAAAATGTAGACCAGTTATGCTTATTTATTTC
TGAATGTGAACTCTCTGGCATTTGTCCAGACAACGGTAAATAGAGGAACT
TGTCTTTGTAGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_e14.b1 MSMg01no116_e14.b1 CHROMAT_FILE:
MSMg01no116_e14.b1 PHD_FILE: MSMg01no116_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:30 2005
         (542 letters)



>mm_chr11_41161425_41162366
          Length = 942

 Score = 1025 bits (530), Expect = 0.0
 Identities = 539/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactcttctagaaatttgttatttattcttaaaatagaaacaccgctctaccttgtaca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 742 taactcttctagaaatttgttatttattcttaaaatagaaacacagctctaccttgtaca 683

                                                                       
Query: 61  caatgatgaatgatgaaagcatacagcccaatatatttccatgaatgagtgggtttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caatgatgaatgatgaaagcatacagcccaatatatttccatgaatgagtgggtttgatt 623

                                                                       
Query: 121 tcctttttggcaatgggaaactcaaaccattagactaaatgtgttcattcaacaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcctttttggcaatgggaaactcaaaccattagactaaatgtgttcattcaacaaaaata 563

                                                                       
Query: 181 tgtcttgtttgatagagtaatgttctgggccaacaaaagagtcttacaaaatttgaaaag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 562 tgtcttgtttgatagagtaatgttctgggccaacaaaagagtcttagaaaatttgaaaag 503

                                                                       
Query: 241 attttcaaggaagtgaatgagatattcatatcttaatggaaataaaactactcactttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attttcaaggaagtgaatgagatattcatatcttaatggaaataaaactactcactttta 443

                                                                       
Query: 301 aaaaggatatacttagaacttcttgtctgggttataataatgctatgcagatgtttcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaaggatatacttagaacttcttgtctgggttataataatgctatgcagatgtttcaca 383

                                                                       
Query: 361 ttccctcttagttttaagaaattaaagttactcagtcattctatagtcctctagaattac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttccctcttagttttaagaaattaaagttactcagtcattctatagtcctctagaattac 323

                                                                       
Query: 421 cagtttgtagataaatagaaatcagctttaaattgttcatcaagtattagagctgtactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagtttgtagataaatagaaatcagctttaaattgttcatcaagtattagagctgtactg 263

                                                                       
Query: 481 gagagttcctatgcaggacacatattcaatgacagtgacccagattttgaaatggacaaa 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagagttcctatgcagtacacatattcaatgacagtgacccagattttgaaatggacaaa 203

             
Query: 541 ca 542
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no116_e14.g1 MSMg01no116_e14.g1 CHROMAT_FILE:
MSMg01no116_e14.g1 PHD_FILE: MSMg01no116_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:30 2005
         (161 letters)



>mm_chr11_41006543_41007103
          Length = 561

 Score =  281 bits (145), Expect = 2e-80
 Identities = 157/161 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccaactctattaagaacatggaatgggaccagctacataacactgtatcatactgaac 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||
Sbjct: 201 atccaactctattaagaacatggaatgggaccagctacataagactgtaaaatactgaac 260

                                                                       
Query: 61  ttcaaaagatgtttggtctttggaatactggtttaaatataatgaatgggctgtctgtca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttcaaaagatgtttggtctttggaatactggtttaaatataatgaacgggctgtctgtca 320

                                                    
Query: 121 gtgaatgtctggtaggaatactgtaaggtgatgtattttag 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaatgtctggtaggaatactgtaaggtgatgtattttag 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)