BAC Information

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BAC

Clone NameMSMg01-116G17
Chromosome11 (Build37)
Map Location 106,585,895 - 106,586,360
singlet/doubletsinglet
Overlap genenone
Upstream geneTanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1
Downstream geneGm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116G17.T7 (MSMg01no116_g17.b1)MSMg01-116G17.TJ (MSMg01no116_g17.g1)
ACCAG327804AG327805
length724723
length of high quality
(start - end)
459 (51 - 509)351 (77 - 427)
definitionCHROMAT_FILE: MSMg01no116_g17.b1 PHD_FILE: MSMg01no116_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:40 2005CHROMAT_FILE: MSMg01no116_g17.g1 PHD_FILE: MSMg01no116_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCACTTGTGGTTCCCGACCTCTGGGTACAGAATTTAGCATTAC
AATACAGAGCAACAGATCTGACCTTAAAACCACCCCACACCAGCTTTTAT
CTAAGTTCTGAGGATCCGAACTCAGAGCCTGAAGCCGCTGATTTGCCTGA
CTGCTCTCAGAGTAACTTCCTCTGCAGCGCACATTTTACAGCGAAGCTTC
AGTTACAGTAAAACCACCTGGCCTTGTTAACTCCATAAAAGACCTGCTAA
AGATAAGATTAAGGGCTTACAGGCCAAAATAACTTTTCTGGCTTACTTTT
ATCTAATTCCTGGGGTGTCTGAGAGCCCCCTAATTCCTGCTAGCACCTTT
ATTTGGAGACTTTTGGACTATTGGACAGGGCGCCTTATTATCTGAGGTAG
TCCAAACATACCCTAAGGCCCCTCCGGTTTTAAAGTCTCTTATGGCCAAC
TGTGACGTCATCACGGCTACTCCTAACTAAAGCGAACTTTTTTTTTTTTC
AAGACAGGGTTTCCTCTGTGCAGTCCTGGTTATTCTATAACTCACTCTTG
TAAACCAGGCTGGCCTCAAACTCGGAAATCCGCCTGCCTCTGCCTCTCAA
GTGCTGGGTTTAAAGGTCCGCGCCTCCACCCCCCAGCCTAAAGCGGTTCT
TTTTAAACAAAAAATAAAGAGCCC
NAATCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTATTTCAGAGCCATTGTCTTAG
TTAGTGTTCTAATTGCTGTGAAGAGACCTTATGACCAAGACAACTCTTAT
AAAGGACATTTAATTGGGGCTGGCTTACAGGTTCAGTCCATCATCATCAA
GGTGGAAGCATGGCAGTGTCTAGGCAGGGATGATGCTGGAGGAGCTGAGA
GTTCTACAGCTTCACCCAAAGGAAGCCAGGAGCAGACTGACCCTTCCACA
CTGGGTGCAGCTTCAAAGCCCACCCCACAATGACACGCTTCCTCCAACAA
GGCCACTTCTCCCAACAGTACCATTCCCTATGGGCCATACATATTCAGAC
CACCCTTTTGGGAGGTGAATTTTATTTGGTGGGCAAGATTTACAGTGTAG
GGCTTTTTGTTTGCTTGTTTGCTTGTTTGCCTGCTTTTCTGTATAACCCT
GGCTGTCCTGTAACTCACTTTGTAGACCAGACTGGCCTCCAACTCATAAA
TCCGTTGCCTCTGCCTCAAGAGTGTTGGGATTCCAGGTTTGTGCTACCAT
GCCTGGTTTAAAGCGTACTTTAGTCACCAATCGAAACGTGCACTATATTA
ATTTTAATTATAGCCTACCCACTGTTAACAACTCCCCGAAATACAGTAGA
TTGGATTTCCCCAGATCATTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_g17.b1 MSMg01no116_g17.b1 CHROMAT_FILE:
MSMg01no116_g17.b1 PHD_FILE: MSMg01no116_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:40 2005
         (459 letters)



>mm_chr11_106585692_106586550
          Length = 859

 Score =  804 bits (416), Expect = 0.0
 Identities = 449/466 (96%), Gaps = 10/466 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcacttgtggttcccgacctctgggtacagaatttagcattacaatacagagcaac 63
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacttgtgggtctagacctctgggtacagaatttagcattacaatacagagcaac 263

                                                                       
Query: 64  agatctgaccttaaaaccaccccacaccagcttttatctaagttctgaggatccgaactc 123
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agatctgaccttaaaaagaccccacaccagcttttatctaagttctgaggatccgaactc 323

                                                                       
Query: 124 agagcctgaagccgctgatttgcctgactgctctcagagtaacttcctctgcagcgcaca 183
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagcctgaagcccctggtttgcctgactgctctcagagtaacttcctctgcagcgcaca 383

                                                                       
Query: 184 ttttacagcgaagcttcagttacagtaaaaccacctggccttgttaactccataaaagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttacagcgaagcttcagttacagtaaaaccacctggccttgttaactccataaaagac 443

                                                                       
Query: 244 ctgctaaagataagattaagggcttacaggccaaaataacttttctggcttacttttatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctaaagataagattaagggcttacaggccaaaataacttttctggcttacttttatc 503

                                                                       
Query: 304 taattcctggggtgtctgagagccccctaattcctgctagcacctttatttggagacttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taattcctggggtgtctgagagccccctaattcctgctagcacctttatttggagacttt 563

                                                                       
Query: 364 tggactattggacagggcgccttattatctgaggtagtccaaacataccctaaggcccct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggactattggacagggcgccttattatctgaggtagtccaaacataccctaaggcccct 623

                                                         
Query: 424 ccggttttaaag----------tctcttatggccaactgtgacgtc 459
           ||||||||||||          ||||||||||||||||||||||||
Sbjct: 624 ccggttttaaagaccgaccgtgtctcttatggccaactgtgacgtc 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)