BAC Information

Click to search

BAC

Clone NameMSMg01-116H15
Chromosome11 (Build37)
Map Location 3,260,233 - 3,260,480
singlet/doubletsinglet
Overlap geneLimk2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1
Downstream geneRnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116H15.T7 (MSMg01no116_h15.b1)MSMg01-116H15.TJ (MSMg01no116_h15.g1)
ACCAG327848AG327849
length713708
length of high quality
(start - end)
249 (71 - 319)177 (127 - 303)
definitionCHROMAT_FILE: MSMg01no116_h15.b1 PHD_FILE: MSMg01no116_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:44 2005CHROMAT_FILE: MSMg01no116_h15.g1 PHD_FILE: MSMg01no116_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCATCTATAATTGCGGCGCTAATACGACTCCTTTCAXXXXXXXXXXX
XXXXXXXXTGCCATGGCAGCTCCCTGCTGATGACGGGGCCAGCCATGGTG
AGCTGCACCTCTGCCCCTCACAGTCCACTGATAACCCTTCCAGGTCCCCG
TGATCAGTCATCACCTGGTCAATAGAAAGATGATGTCCTTTATCGTTCAT
TCAGCCACAGGAGTCCACCGAGCCCTTACTAAAGACAGGTCTAGCCTTCC
CTCTGTTTTGGGTGGTCCAGAGGACTATCTGTGAGAGCTGTGATTTTGGT
TTCCAGTGAGTGGCAAGCTTTTTTAAATGCAGCAGCAGTGTAGCAGCTGG
TAGGATGCCGTAGACTCACAGCAAACACCATCATATCGGGATCCTGAGTT
GTAGCAGACAGGAGTGACCTCATCAGATCAGAGGCTCACAAATAACCTAG
CAGAACAACTGCAGACCCCCAGCGAGGAAGCCAGCTGCATCTCCCGATGA
CAGAGTCCTAGGTGGAGTCGAGTGACCCCTCAAGTGAAGCTACCAAGCGA
AAGAAAGGAGCATCAGGCCAGGTGCTTACAGCATCCAGCAGAAACTGACA
GAAAGTTGAGACCAGACTCCCTGACTTAGCTTTGCCTTCCACGGATGAAC
TTTGGTGGCCTGAACTTCCTTTCAACCGCTATTTAAGCCTTCCTGTGGGC
ACTTTTATATCGT
CCCCCGCGATGCAGTGGGAGGCTGGCGGCGCCTGTCGAAAAATTTAGGTG
ACCTATAGAATTACCAAGAAGTTCAGCTGAAAATAGTGATTTGGATTCTT
AGGTCTATCCTCGATAACGCCCTTTGAGCTTTAGGACAGCACTTGAGATG
ATGACGCACAAGGATCTCAAATTTTAAGGCCATCCTGGGCTCCATAATCG
AGTTTGCAGCTACATGGAAGAGCCAGTCACAAGTAATGGCTTTCTGGCCA
GCACTTGTAATTGGTAAACAGTGAGCAGTGAAGTCCTGTGGCTGTTACAG
AATATGCCTGGAAGAATCATCTCCACCAGGCTTGGTGTTTCTACTATTGA
ACCACTATATACAGCTGGCCGCTTGCCCTTGCCAGACATACACCTTAGCG
TTGTCCACCGTGATGGGGACTTGTAAGGAGAGTCTCAGAGCACTGGACTC
AGCTTTACCACCAGTTCGCTTGTCAAGCACGGCCACTTTGCTGAATAGAA
ATGTTCTTAGCCCAGCCTGAGAGCTCTCAGAAAAGGACAAAGCTCACAGA
GTATCGTGAAGGTTGCACGATTCGGACGGGCTGTTAAGAGCTCTGCTTAA
AGCCCACTACACAATGTGGTAGGAGAGGGAGAAAGGTATATACTGTCTGT
CTAAAAAATCAACGCTTCCTCGTGTATTACATCCACTCTGCTTGGCCGGT
TGCTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_h15.b1 MSMg01no116_h15.b1 CHROMAT_FILE:
MSMg01no116_h15.b1 PHD_FILE: MSMg01no116_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:44 2005
         (249 letters)



>mm_chr11_3260033_3260681
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgctgatgacggggccagccatggtgagctgcacctctgcccctcacagtccactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccctgctgatgacggggccagccatggtgagctgcacctctgcccctcacagtccactg 389

                                                                       
Query: 61  ataacccttccaggtccccgtgatcagtcatcacctggtcaatagaaagatgatgtcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ataacccttccaggtccccgtgatcagtcatcacctggtcaatagaaagatgatgtcctt 329

                                                                       
Query: 121 tatcgttcattcagccacaggagtccaccgagcccttactaaagacaggtctagccttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tatcgttcattcagccacaggagtccaccgagcccttactaaagacaggtctagccttcc 269

                                                                       
Query: 181 ctctgttttgggtggtccagaggactatctgtgagagctgtgattttggtttccagtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctctgttttgggtggtccagaggactatctgtgagagctgtgattttggtttccagtgag 209

                   
Query: 241 tggcaagc 248
           ||||||||
Sbjct: 208 tggcaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)