BAC Information

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BAC

Clone NameMSMg01-117F06
Chromosome11 (Build37)
Map Location 37,221,545 - 37,221,784
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117F06.T7 (MSMg01no117_f06.b1)MSMg01-117F06.TJ (MSMg01no117_f06.g1)
ACCAG328489AG328490
length709713
length of high quality
(start - end)
569 (41 - 609)241 (328 - 568)
definitionCHROMAT_FILE: MSMg01no117_f06.b1 PHD_FILE: MSMg01no117_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:51 2005CHROMAT_FILE: MSMg01no117_f06.g1 PHD_FILE: MSMg01no117_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCATTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGACAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAGTTCTCGATCTTACAGCACAAGCCATTGTTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTATCTCTGGTTTTAAGTGAAGTTCCTTGATCCACT
TAGATTTGATCTTAGTACAAGGAGATAAGTATGGATTGATTCGCAATCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGCCTCTATACCAGTACCATGCCGTTTTTATCACAATTGCTCTTGT
AATAAGCTTTTGGTCAGGCATGGCGATTCCACCAGAGGTTCTTTTATTCT
TGAGAAGAG
CCGATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCCGAACTGGGGGTGAC
CTATAGAAGGTTTCGAGAAATAGCCGTTGACCTCTTGTTTATATCAGAAA
TCATTTTTAAGATTTATTTTTACCTATGTGTGAGAAATAGTAAGAAAGTG
CTAAGAGAGTTAGGAGAGGGAGAGAGCGAGAGAGCTAGAGAGCAAGAGCG
AGTGAGGGGGGAATATAAAATTACTCATAAAGTGTAGAAGAAGATATTAG
AACCCTTGAGAGTTACAAGTGCCTGTGAGTTTCCCAGTGTGACATGGTGT
GACATGGGTTCTGAAAATTANATTATTTTCCTCTGGAAGAGATTTAAGTA
CCCCTAAATTCTGATACACTTCTCCATTCCCAAGAATTTATTATTAAAGT
TTTGCCATCATATTCTCATGAGGTATAAACTCTTATTTCCCAAAGGAAGA
AAGGTACCTTAATCTCTCTACACATTGTCTATAGACCTCTATCTATAGTT
ATGCCTCTAATGTTTCCACATCGTAGGACTCTGGCACCTTGTAGATGTTT
AGTCGAATAGACAATCCATGTCAGTGGTAGTATTATTTAATTGCTCATGT
CCAAAATCATATTAGATCAGAAAAAAGATGGAAGCAATTTCCTGCCATTG
GCCAAACTCAGTCTGTCTCTTATTGTCAGATGCCCCCAGAATGATAGATA
ATATTATGCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_f06.g1 MSMg01no117_f06.g1 CHROMAT_FILE:
MSMg01no117_f06.g1 PHD_FILE: MSMg01no117_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:51 2005
         (241 letters)



>mm_chr11_37221344_37221984
          Length = 641

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcctctggaagagatttaagtacccctaaattctgatacacttctccattcccaagaatt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctctggaagagatttaagtacccctaaattctgatacacttctccattcccaagaatt 382

                                                                       
Query: 62  tattattaaagttttgccatcatattctcatgaggtataaactcttatttcccaaaggaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattattaaagttttgccatcatattctcatgaggtataaactcttatttcccaaaggaa 322

                                                                       
Query: 122 gaaaggtaccttaatctctctacacattgtctatagacctctatctatagttatgcctct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaggtaccttaatctctctacacattgtctatagacctctatctatagttatgcctct 262

                                                                       
Query: 182 aatgtttccacatcgtaggactctggcaccttgtagatgtttagtcgaatagacaatcca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtttccacatcgtaggactctggcaccttgtagatgtttagtcgaatagacaatcca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)