BAC Information

Click to search

BAC

Clone NameMSMg01-118A10
Chromosome11 (Build37)
Map Location 115,271,377 - 115,373,358
singlet/doubletdoublet
Overlap geneIct1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1
Upstream gene4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l
Downstream geneSumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A10.T7 (MSMg01no118_a10.b1)MSMg01-118A10.TJ (MSMg01no118_a10.g1)
ACCAG329007AG329008
length752692
length of high quality
(start - end)
285 (145 - 429)299 (72 - 370)
definitionCHROMAT_FILE: MSMg01no118_a10.b1 PHD_FILE: MSMg01no118_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:45 2005CHROMAT_FILE: MSMg01no118_a10.g1 PHD_FILE: MSMg01no118_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,373,077 - 115,373,358)(115,271,377 - 115,271,675)
sequence
CCACCATATACCCACCCACACCCTTCTCCTTTTTTTTCTCTCCCGGNCNN
CGGGTGGGGNNNGTATCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCAAGAGGATCCGCGGAATTACCATGGTTTTCTAATTCCACTTAGCGATG
AAAGCCTCCCTCTCTGGGGATTGAGGGAGGACAAAGAGCCACGTTGGGGT
TGATTCTAATATTTCAAGTGTTTTCAGTCATTTAAGGCAAAAATTCAAAA
CAGTTCTACCCAGTAAGAAAGAACCTGTAGAGCTGGAGATGTGGTGGTTT
GTCCATAGCCTGGGCAAGACACTGGGTTCTGCCCCCAGCAGTTCCCCACT
TCCCTTCCCCCCTAAAAAATCACCCCAGAATTTATCTATACCTTTAGTAG
TAATTTAAACAACTTAATTACCTGGGAACCTGGTTGGCGGGTGTGAGCCT
GTTATACCGGCACTAGGGAGGCAGGAGTGGGAGGCTGGCAAGTATATACC
ATAACACATTTATCTTGATTTAAATAATGAATAAAAGCTGGTTCTTGTCT
GTGTGTGTGTATGGGAATCCCAGCTCATGTGGGCTTTTTCCACTGGGCTT
GGAATTTTTCCCTCCCAAAGTTTCACCCCTCTCCATTTTTTTGGCCTTTT
TTTTGGAACCTTCTTATATTGGTTTCCAGATATTATAAATTGGTCCCCTC
CTTTGTATCATATATTCTTTTTAGCCTTGCTTTTTATAGGGGTTCCGCTT
CT
NCACATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCGCGAAATTCCAAGGCTGAAGTAAGGTTTCACTTG
GCCAGTGCAGACTGGATTGAGGACCCCGTGCGCCAGAAGATTGCCCTCAC
GGTACCTACCCCCTTTCTGTCCCCGTGGATCCCTGGGTTGGGCAGAGGCT
TGTGGGCCTTTCGGGCATTCCTCATTTTCCTCCTTGGCAGCATAAAAATA
AGATCAACAAGGCAGGAGAGCTGGTACTTACCTCTGAGAGCAGCCGGTAT
CAGTTCCGCAATCTGGCAGAATGCCTACAGAAAATTCGAGACATGATTGC
CGAGGCCAGCCAGGTACCCAAAGAGCCATCCAAGGAAGATGCTCGGCTTC
AGAGACTCAGGTAAAGAAACACTCGACGGCAAGTGGGTTTCTAGGTACCA
GGGCTGGGCAGGGGAGAGGCCGGTCGCAGAAGCTTCCCACAGGGCAGTGG
TGATAGAAGCTGCTAAGAGGAGAAGGTGCATACCCAGGCCCGGGTACACA
TCTGGTTCCTGACTGCTTCCAGCTTTGAAAAGTGGTGATTGCACATCTGG
GCCTCATTGCTGTCCTTTGTTTTCAGGATTTGAAAAATGAATCGGGAAAG
GCTACTACCGCAAAAAATAAACTCTGCCCTTCTTACCAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a10.b1 MSMg01no118_a10.b1 CHROMAT_FILE:
MSMg01no118_a10.b1 PHD_FILE: MSMg01no118_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:45 2005
         (285 letters)



>mm_chr11_115372874_115373558
          Length = 685

 Score =  499 bits (258), Expect = e-146
 Identities = 276/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   atgaaagcctccctctctggggattgagggaggacaaagagccacgttggggttgattct 63
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 485 atgaaagcctccctctctggggattgagggaggacaaagaggcacgttggagttgattct 426

                                                                       
Query: 64  aatatttcaagtgttttcagtcatttaaggcaaaaattcaaaacagttctacccagtaag 123
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 aatatttcaagtgttttcagtcatttaaggtaaaaattcaaaacagttctacccagtaag 366

                                                                       
Query: 124 aaagaacctgtagagctggagatgtggtggtttgtccatagcctgggcaagacactgggt 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 365 aaagaacctgtagagctggagatgtggtggtttgtccgtagcctgggcaagacgctgggt 306

                                                                       
Query: 184 tctgcccccagcagttccccacttcccttcccccctaaaaaatcaccccagaatttatct 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tctgcccccagcagctccccacttcccttcccccctaaaaaatcaccccagaatttatct 246

                                                     
Query: 244 atacctttagtagtaatttaaacaacttaattacctgggaac 285
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atacctttagtagtaatttaaacaacttaattacctgggaac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no118_a10.g1 MSMg01no118_a10.g1 CHROMAT_FILE:
MSMg01no118_a10.g1 PHD_FILE: MSMg01no118_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:45 2005
         (299 letters)



>mm_chr11_115271177_115271875
          Length = 699

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccaaggctgaagtaaggtttcacttggccagtgcagactggattgaggaccccgtgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 attccaaggctgaagtaaggtttcacttggccagtgcagactggattgaggagcccgtgc 260

                                                                       
Query: 61  gccagaagattgccctcacggtacctaccccctttctgtccccgtggatccctgggttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagaagattgccctcacggtacctaccccctttctgtccccgtggatccctgggttgg 320

                                                                       
Query: 121 gcagaggcttgtgggcctttcgggcattcctcattttcctccttggcagcataaaaataa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gcagaggcttgtgggcctttcgggcatttctcattttcctccttggcagcataaaaataa 380

                                                                       
Query: 181 gatcaacaaggcaggagagctggtacttacctctgagagcagccggtatcagttccgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcaacaaggcaggagagctggtacttacctctgagagcagccggtatcagttccgcaa 440

                                                                      
Query: 241 tctggcagaatgcctacagaaaattcgagacatgattgccgaggccagccaggtaccca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggcagaatgcctacagaaaattcgagacatgattgccgaggccagccaggtaccca 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)