BAC Information

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BAC

Clone NameMSMg01-118B03
Chromosome11 (Build37)
Map Location 46,237,690 - 46,325,346
singlet/doubletdoublet
Overlap geneCrsp9, LOC100039730, Havcr2
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491
Downstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118B03.T7 (MSMg01no118_b03.b1)MSMg01-118B03.TJ (MSMg01no118_b03.g1)
ACCAG329040AG329041
length705690
length of high quality
(start - end)
459 (93 - 551)539 (79 - 617)
definitionCHROMAT_FILE: MSMg01no118_b03.b1 PHD_FILE: MSMg01no118_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:48 2005CHROMAT_FILE: MSMg01no118_b03.g1 PHD_FILE: MSMg01no118_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,324,890 - 46,325,346)(46,237,690 - 46,238,228)
sequence
NCCCCCCCGCGACCGGNNAGGACTCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAGTCTCGTGGATGCTGAGG
TATCCCTATCCCTATGCAATGGAATTTCAGGCAATTGCGAGCCACCTGGG
GTGAGCGCTGGAAGCTGGGCTTGGGCTTATGCAGAAGCCTTACAGCTGAG
ACAGGACTCTATGCCTTTCAGCATTTCTTAATACAATAGGCACCCGAGGA
AAGAAGCATCAAATAAAATCAAAGAGCAAATCAACGAAACTCTTTCAATA
CCAGCTCCAGAAGACAAATCCACCATGCAATCCTTGCTACAAGCTGTCAG
GGCTGACGGGCTCCTTCTGTACCAAGTTCAGGCACAGGAGTTGGGAAATC
AGATGGCTGACATATCCTTAGAGGGTATGGTAGGAAGAGAAAGGCTCGGG
AAACTAGTTTTAGAATCCAAGTCGAGCAACAGAAGCCAAGCAAGGTGTCC
CAGCCTAGGAAAACAGGAGGAAGGGGTGGAAGTGGGAGGAAGAGGAGGAG
GATGACGCCCCTTCCCCCCCTTCCCCCCTTTTCCCCCCCCCTTCCCCTTT
TTTCCTCTCTTCCCTCCCCCCCCCTTTTTTCCCCCTTCCTCCCCCTTTTC
TTCCCCGCTCTCTTCTTTTCCCTTTCCTCTCCCCCCTCACCCCTCTTCCC
CCCCG
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGCTGTTCATGACGAACTC
TCATATAACAGAAACAGAGCTTCAATATGAAACAGCACAAAACCCCTTGA
GCTAACACTGTACTTAGTGATGAAGGCCCATGTTTCTCTATAATCAAAGC
CGAGTAAGAATGTCTGCATTCCCTCAGTAGAGTGCCTGGAGCTGTGGACA
GTGCCCTAGGCAAAAACACAGCATCATCAGATGGAGAAAACCTGAGTGCT
ATATAGGTACTCCCTAGGTATTCACAATGAAGTTCCAAGAACAGAGATGC
ATGAATTCACCAAGTTCACAGAATACAAAATACAAGTATTTACATGTGAA
TCTAAAATACTGTACACAGCTCCAAGGGAAAAAATCTAGAAGTCTAAGCC
AGTGGAGAGAGATATCCAGGTCATGAATTCAAAGTTTTAGTATTTCTGTC
TTTCCCAAAGTATTTTATAGGTGTGGCATGCTATCAATTAAAACCCTAAC
AAGATATTTTTGCACACACAAAATTACATAAAATTTATCCACATGAGAAA
TAAATACAACCACTCAGAAAAACCATAAAAAATAACTAAGCAGTAGGGAT
AAGCCTATCCAATTTCAAGACACTGTATAGTGGTAGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_b03.b1 MSMg01no118_b03.b1 CHROMAT_FILE:
MSMg01no118_b03.b1 PHD_FILE: MSMg01no118_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:48 2005
         (459 letters)



>mm_chr11_46324690_46325548
          Length = 859

 Score =  814 bits (421), Expect = 0.0
 Identities = 448/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgaggtatccctatccctatgcaatggaatttcaggcaattgcgagccacctggggt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgctgaggtagccctatccctatgcaatggaatttcaggcaattgcgagccacctggggt 598

                                                                       
Query: 61  gagcgctggaagctgggcttgggcttatgcagaagccttacagctgagacaggactctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gagcgctggaagctgggcttgggcttatgcagaagccttacagctgagacaggactctat 538

                                                                       
Query: 121 gcctttcagcatttcttaatacaataggcacccgaggaaagaagcatcaaataaaatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gcctttcagcatttcttaatacaataggcacccgaggaaagaagcatcaaataaaatcaa 478

                                                                       
Query: 181 agagcaaatcaacgaaactctttcaataccagctccagaagacaaatccaccatgcaatc 240
           ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 agagcatttcaacgaaactctttcaataccagctccagaagacaaatacaccatgcaatc 418

                                                                       
Query: 241 cttgctacaagctgtcagggctgacgggctccttctgtaccaagttcaggcacaggagtt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 417 cttgctacaagctgtcagggctgatgggctccttctgtaccaagttcaggcacaggagtt 358

                                                                       
Query: 301 gggaaatcagatggctgacatatccttagagggtatggtaggaagagaaaggctcgggaa 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gggaaatcagatggctgacacatccttagagggtatggtaggaagagaaaggctcgggaa 298

                                                                       
Query: 361 actagttttagaatccaagtcgagcaacagaagccaagcaaggtgtcccagcctaggaaa 420
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 297 actaattttagaatccaagtcgagcaacaggagccaagcaaggtgtcccagcctaggaaa 238

                                                
Query: 421 acaggaggaaggggtggaagtgggaggaagaggagga 457
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 237 acaggaggaaggggtggaagtgggaggaagaagagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_b03.g1 MSMg01no118_b03.g1 CHROMAT_FILE:
MSMg01no118_b03.g1 PHD_FILE: MSMg01no118_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:48 2005
         (539 letters)



>mm_chr11_46237490_46238428
          Length = 939

 Score = 1035 bits (535), Expect = 0.0
 Identities = 538/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagctgttcatgacgaactctcatataacagaaacagagcttcaatatgaaacagcac 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aacagctgttcatgacgaactctcatataacagaaatagagcttcaatatgaaacagcac 260

                                                                       
Query: 61  aaaaccccttgagctaacactgtacttagtgatgaaggcccatgtttctctataatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccccttgagctaacactgtacttagtgatgaaggcccatgtttctctataatcaaa 320

                                                                       
Query: 121 gccgagtaagaatgtctgcattccctcagtagagtgcctggagctgtggacagtgcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgagtaagaatgtctgcattccctcagtagagtgcctggagctgtggacagtgcccta 380

                                                                       
Query: 181 ggcaaaaacacagcatcatcagatggagaaaacctgagtgctatataggtactccctagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaaaaacacagcatcatcagatggagaaaacctgagtgctatataggtactccctagg 440

                                                                       
Query: 241 tattcacaatgaagttccaagaacagagatgcatgaattcaccaagttcacagaatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattcacaatgaagttccaagaacagagatgcatgaattcaccaagttcacagaatacaa 500

                                                                       
Query: 301 aatacaagtatttacatgtgaatctaaaatactgtacacagctccaagggaaaaaatcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacaagtatttacatgtgaatctaaaatactgtacacagctccaagggaaaaaatcta 560

                                                                       
Query: 361 gaagtctaagccagtggagagagatatccaggtcatgaattcaaagttttagtatttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagtctaagccagtggagagagatatccaggtcatgaattcaaagttttagtatttctg 620

                                                                       
Query: 421 tctttcccaaagtattttataggtgtggcatgctatcaattaaaaccctaacaagatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttcccaaagtattttataggtgtggcatgctatcaattaaaaccctaacaagatatt 680

                                                                      
Query: 481 tttgcacacacaaaattacataaaatttatccacatgagaaataaatacaaccactcag 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgcacacacaaaattacataaaatttatccacatgagaaataaatacaaccactcag 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)