Query= MSMg01no118_e12.b1 MSMg01no118_e12.b1 CHROMAT_FILE:
MSMg01no118_e12.b1 PHD_FILE: MSMg01no118_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:05 2005
(549 letters)
>mm_chr11_39778172_39779120
Length = 949
Score = 1046 bits (541), Expect = 0.0
Identities = 547/549 (99%)
Strand = Plus / Minus
Query: 1 aatgaacttccttaactacaaactgtccaaatcaatcagagtttgacagtgcctcggtaa 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aatgaacttaattaactacaaactgtccaaatcaatcagagtttgacagtgcctcggtaa 690
Query: 61 cacacagagttcataatttacttgaaatctgctgtaatgcatatgcccataaattgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cacacagagttcataatttacttgaaatctgctgtaatgcatatgcccataaattgctca 630
Query: 121 gaagccatgctcactgtgcacaaaatttagtgccacgccacgtgatgctgctctgggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaagccatgctcactgtgcacaaaatttagtgccacgccacgtgatgctgctctgggaga 570
Query: 181 aaattgttctttcagcacataagactatttggaaagatgcagtttacattttcatttaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaattgttctttcagcacataagactatttggaaagatgcagtttacattttcatttaag 510
Query: 241 caactaatgaacttctgaaaaataaatgcattgcttttggccccaattgcatttgtcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 caactaatgaacttctgaaaaataaatgcattgcttttggccccaattgcatttgtcata 450
Query: 301 gaaatttagaaaacgaaaaatgtttgtatttctaggtgtttcagcattatgagcgacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaaatttagaaaacgaaaaatgtttgtatttctaggtgtttcagcattatgagcgacatg 390
Query: 361 tgtggtgagagttgcctgattggttacaaagtggcagaaattcagtctcaggataagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtggtgagagttgcctgattggttacaaagtggcagaaattcagtctcaggataagtga 330
Query: 421 aaactttaagttttatagataaaaagaattgagctttagaaccttataacccctctatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaactttaagttttatagataaaaagaattgagctttagaaccttataacccctctatct 270
Query: 481 actatgaaaacatattttgattatttactcaatctgagttatttgcaccttataagctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actatgaaaacatattttgattatttactcaatctgagttatttgcaccttataagctat 210
Query: 541 tttgcctta 549
|||||||||
Sbjct: 209 tttgcctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_e12.g1 MSMg01no118_e12.g1 CHROMAT_FILE:
MSMg01no118_e12.g1 PHD_FILE: MSMg01no118_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:05 2005
(559 letters)
>mm_chr11_39718682_39719642
Length = 961
Score = 1050 bits (543), Expect = 0.0
Identities = 557/563 (98%), Gaps = 4/563 (0%)
Strand = Plus / Plus
Query: 1 agaatggaaaaaaaa---taaagctttgtgttgtggtaactcagcaaacactaactttac 57
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agaatggaaaaaaaaaagtaaagctttgtgttgtggtaactcagcaaacactaactttac 258
Query: 58 aaggagatgatattaatatacatgatatgccatagggctagtatatgtgtgatttgctta 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaggagatgatattaatatacatgatatgccatagggctagtatatgtgtgatttgctta 318
Query: 118 aaagaaaaaactacctttgtagccttgcttcccaacacattttccacagctaaccctgaa 177
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaagaaaaaactgcctttgtagccttgcttcccaacacattttccacagctaaccctgaa 378
Query: 178 aatagaacctgaaataaccctcaccatttcatgcaaaactacaaggaaatcctaagtaac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatagaacctgaaataaccctcaccatttcatgcaaaactacaaggaaatcctaagtaac 438
Query: 238 taaagaacattaaaaagcataagactagggacaatgaaatataaagtggtaacttggaat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaagaacattaaaaagcataagactagggacaatgaaatataaagtggtaacttggaat 498
Query: 298 cctgcaacagaaatttgacgcttcagaaaggacaacagagtctgcttcaagtgtggtgct 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 499 cctgcaacagaaatttgacgcttcagaaaggacaacagaatctgcttcaagtgtggtgct 558
Query: 358 aagtgattgtcagtattattaactagtctgccctacttcttaacggtgatatgtatcaca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtgattgtcagtattattaactagtctgccctacttcttaacggtgatatgtatcaca 618
Query: 418 ctaaaggaaagaatctttggtgctggaaagagaggaactgaacatgtttatagacattaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctaaaggaaagaatctttggtgctggaaagagaggaactgaacatgtttatagacattaa 678
Query: 478 gtttgacaattttttt-aaagtatgctacagtaaagaatctatacatatgtcatttgata 536
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtttgacaattttttttaaagtatgctacagtaaagaatctatacatatgtcatttgata 738
Query: 537 tctacgtgctataacacatagga 559
|||||||||||||||||||||||
Sbjct: 739 tctacgtgctataacacatagga 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space: 522099
Effective search space used: 522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
