BAC Information

Click to search

BAC

Clone NameMSMg01-118F23
Chromosome11 (Build37)
Map Location 96,947,121 - 97,093,840
singlet/doubletdoublet
Overlap geneTbx21, Tbkbp1, Kpnb1, Npepps
Upstream geneNdp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7
Downstream geneEG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F23.T7 (MSMg01no118_f23.b1)MSMg01-118F23.TJ (MSMg01no118_f23.g1)
ACCAG329263AG329264
length742725
length of high quality
(start - end)
229 (134 - 362)360 (69 - 428)
definitionCHROMAT_FILE: MSMg01no118_f23.b1 PHD_FILE: MSMg01no118_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:12 2005CHROMAT_FILE: MSMg01no118_f23.g1 PHD_FILE: MSMg01no118_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,947,121 - 96,947,348)(97,093,547 - 97,093,840)
sequence
TAGCANAGATCTATAATTGCGGCGCTAATACGACTCCTATATCCAGAGAA
CCGCGGAATTCACTTTGTATACACACAGGCCTGGAACTCAGAAATCCGCC
TGCCTCTGCCTCCCAAGTGCTGGATTTAACCCCGTGCGCTACCCCTTCCC
GGCGCCTCGTGCTTTTCATTTGGAAGCTTCCAAGCCAAGCAAAAGATTTC
CTGCCGTGGTATGAAGATCTGACGGCCAGCATAATGCTCAGCTGTGGCAC
CCAAAGCCAGAAGCCAGAAGGAAACGCTCAAAGGGTGGAAGGTAAATCCA
GATCGTGGCTTCCCAAAGTCCTTCTTCTGTCTCTTTCATTAGCAAGAAAA
GCTTGAACTGGCGTTTATTTTATTTATGTCCACCACCAACACAGCTCACC
TCTCCTGCCTCATCTGTTGCTACACCCACCTGAATTAAAAACATGTGTCC
CTTCCGTCCGTGCATCTCCTTCCATCCCCTCGGTTTTCCCCTGCGTAGCA
CTGATTGTTCTGGATCTCAACCTGTACACCTCCCTGGCCTTGAATTCTTT
AGCTATGCTTGCCTTTCGCTCCCGAGTATTACGATCACTGTTTACCACCT
CCCGCCCTTCCCCACCCTGATTACCTCTTTTGTTACTGTTTTCCTGCCAC
CGCCATAATTTCCACTTTCCTTCTCTCTTTACTTTCCCGCGCTACCATGT
TTGTCCATTTCTTTTGCAACTCACCCCACTTTGTTACTCCCT
AATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTAGATCAGGCCGGTCTCAAACTTAGATA
AATGCGCATTCCTCTGCCTCCCTCTTGCTGGTATTGGAGGCGCACACTAC
CACACCCAGCTCATGTTACCAATTTCCTTATGGGTGCTGGGTGAAGGGGA
TCTGACCTCGTGCTAGTGTGGCAAGCACTTGACTGAGTCCCCAGAACAGC
TTTTTTTAGTAGAATTTACTTAGTTGTAGCCTTGTGGGTAGACCATTTGT
TTGAGCCTCTGTATGATGGACCTAACAGTTGGTAAGCCATGCAATGTTAA
AAGGTATGTGAATATTTGATACAGGAAATAAACATTTCCAGTTATTGTTT
TCATTTACCTTCTAGAGGATCTCTGGGAAAGTTTGGAAAGTGCCAGTGGC
AAACCCATAGTAGCTGTGATGAATACCTGGACCAAACAAATGGGATTCCC
TCTCATTTATGTGGAAGCTGAACAGGCAAGCCTGCGACAATCCTTGCACA
GCTGGTCGTGATGTGTCATCCATGGAATCTCTGTACTTTGAAGGAGATAA
GCAGACATGAGTCTGAGCCATGTCTTGGCTACCTAGCCTGACAGTTTGTA
AAACCAAGATAATATTACCACACCCCAATGATCGCTCCCTTCTCCGAGGA
TCTCATTTCTCTAACCTGCTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f23.b1 MSMg01no118_f23.b1 CHROMAT_FILE:
MSMg01no118_f23.b1 PHD_FILE: MSMg01no118_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:12 2005
         (229 letters)



>mm_chr11_96946921_96947549
          Length = 629

 Score =  402 bits (208), Expect = e-117
 Identities = 223/228 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcgctaccccttcccggcgcctcgtgcttttcatttggaagcttccaagccaagcaaa 60
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcgctacccctgcccggcgccttgtgcttttcatttggaagcttccaagccaagcaaa 260

                                                                       
Query: 61  agatttcctgccgtggtatgaagatctgacggccagcataatgctcagctgtggcaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatttcctgccgtggtatgaagatctgacggccagcataatgctcagctgtggcaccca 320

                                                                       
Query: 121 aagccagaagccagaaggaaacgctcaaagggtggaaggtaaatccagatcgtggcttcc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 321 aagccagaagccagaaggaaacgctcaaagggtggaaagtaaatccagatcgtgggttcc 380

                                                           
Query: 181 caaagtccttcttctgtctctttcattagcaagaaaagcttgaactgg 228
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 caaagtccttcttctggctctttcattagcaagaaaagcttgaactgg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no118_f23.g1 MSMg01no118_f23.g1 CHROMAT_FILE:
MSMg01no118_f23.g1 PHD_FILE: MSMg01no118_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:12 2005
         (360 letters)



>mm_chr11_97093171_97093930
          Length = 760

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctagatcaggccggtctcaaacttagataaatgcgcattcctctgcctccctcttgc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 670 actctagatcaggccggtctcaaacttagataaatgcccattcctctgcctccctcttgc 611

                                                                       
Query: 61  tggtattggaggcgcacactaccacacccagctcatgttaccaatttccttatgggtgct 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tggtattggaggcgcacactatcacacccagctcatgttaccaatttccttatgggtgct 551

                                                                       
Query: 121 gggtgaaggggatctgacctcgtgctagtgtggcaagcacttgactgagtccccagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gggtgaaggggatctgacctcgtgctagtgtggcaagcacttgactgagtccccagaaca 491

                                                                       
Query: 181 gctttttttagtagaatttacttagttgtagccttgtgggtagaccatttgtttgagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gctttttttagtagaatttacttagttgtagccttgtgggtagaccatttgtttgagcct 431

                                                                 
Query: 241 ctgtatgatggacctaacagttggtaagccatgcaatgttaaaaggtatgtgaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgtatgatggacctaacagttggtaagccatgcaatgttaaaaggtatgtgaa 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)