Query= MSMg01no118_n15.b1 MSMg01no118_n15.b1 CHROMAT_FILE:
MSMg01no118_n15.b1 PHD_FILE: MSMg01no118_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:49 2005
(286 letters)
>mm_chr11_77298731_77299414
Length = 684
Score = 503 bits (260), Expect = e-147
Identities = 279/286 (97%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 aaagctcacagctgtttgtttaattgccgcaatgaaaaggtttccatgacccccaacacc 60
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 201 aaagctcacagctgtttgtttaattgctgcaatgaaaaggtttccatgaaacccaacacc 260
Query: 61 cgccctccccacagagagagtagagcctcctggacccagcaggctcagagagaatcatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccctccccacagagagagtagagcctcctggacccagcaggctcagagagaatcatag 320
Query: 121 cagaagtctttagatttaacggctggggctccctgggcagaagcttccctgcccccaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagtctttagatttaacggctggggctccctgggcagaagcttccctgcccccaccc 380
Query: 181 acgagcagcacccccccgtgcacacgtacactggtacgcacaggttccagaagaaagcat 240
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagcagcaccccc--gtgcacacgtacactggtacgcacaggttccagaagaaagcat 438
Query: 241 gctcgtcctatctacacccctgaacctgtgcacccttgacagcaca 286
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 gctcgtcctacctacacccctgaacctgtgcacccttgacagcaca 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no118_n15.g1 MSMg01no118_n15.g1 CHROMAT_FILE:
MSMg01no118_n15.g1 PHD_FILE: MSMg01no118_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:50 2005
(404 letters)
>mm_chr11_77444445_77445248
Length = 804
Score = 690 bits (357), Expect = 0.0
Identities = 363/365 (99%)
Strand = Plus / Minus
Query: 1 ttttcaaatgaaccagggaaaatgctttggcaggcctgcccttcttgaagctgctgtgag 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttttcaaatgaaacagggaaaatgctttggcaggcctgcccttcttgaagctgctgtgag 306
Query: 61 catgttgctcatacccgtgcaatgtcagtaatgaagaattcgctgtgcatctgtgtctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catgttgctcatacccgtgcaatgtcagtaatgaagaattcgctgtgcatctgtgtctgg 246
Query: 121 gagggggcagctcctgcgattatgtgaaaagtttaaagatttttatttatttttacttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagggggcagctcctgcgattatgtgaaaagtttaaagatttttatttatttttacttca 186
Query: 181 tgagtgtataaaaagatgtatgcctgctgtcttcggaggtcagaagaaagaattcagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgagtgtataaaaagatgtatgcctgctgtcttcggaggtcagaagaaagaattcagtgt 126
Query: 241 tctgcaactagagtaacagctggttgtgggaccaggtacgtactcggaacaaaacccagg 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 125 tctgcaactagagtaacagctggttgtgggaccaggtacttactcggaacaaaacccagg 66
Query: 301 tcctccgcaaaagcagaaagcgttctttacctctgagccatctatccagactgactcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tcctccgcaaaagcagaaagcgttctttacctctgagccatctatccagactgactcttt 6
Query: 361 gttgt 365
|||||
Sbjct: 5 gttgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
