Query= MSMg01no118_o20.b1 MSMg01no118_o20.b1 CHROMAT_FILE:
MSMg01no118_o20.b1 PHD_FILE: MSMg01no118_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:55 2005
(614 letters)
>mm_chr11_6091004_6092017
Length = 1014
Score = 1106 bits (572), Expect = 0.0
Identities = 598/614 (97%), Gaps = 12/614 (1%)
Strand = Plus / Plus
Query: 1 cttcacagtaagaccctattctaattaataattaaataaataaataaataaataaataaa 60
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 213 cttcacagtaagaccctattctaattaataat------------taaataaataaataaa 260
Query: 61 taaataaataaataaataaaaattttaaaaagtggaaagatctgattttaacctccaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataaataaataaataaaaattttaaaaagtggaaagatctgattttaacctccaaaa 320
Query: 121 ctcaagtcaaaacaaaccaaaatagtcaggtacagtggaggttaataatcctagtccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctcaagtcaaaacaaaccaaaatagtcaggtacagtggaggttaataatcctactccagg 380
Query: 181 agaggcagacaagggggaccctgcaaagcctggccaacttgaagttccaaggtaatgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggcagacaagggggaccctgcaaagcctggccaacttgaagttccaaggtaatgaga 440
Query: 241 ctctatcagactttaaaaaacaaaacgaaacaaaaacaaaggaccctgaggaacaacatc 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctctatcagactttaaaaaacaaaacaaaacaaaaacaaaggaccctgaggaacaacatc 500
Query: 301 caaggccgtcttctgaccaccacatgcactcatacacacaagatcattaaaacacccctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggccgtcttctgaccaccacatgcactcatacacacaagatcattaaaacacccctt 560
Query: 361 acttctggctctgtgagtcaccattaatactgcattgcttctcgagggttttcaaatttg 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 acttctggctctgtgagtcaccattaatactgcattgcttctccagggttttcaaatttg 620
Query: 421 gcgttcaacagtaaggtatataccgttactcttacttaacattaattattaccatgaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgttcaacagtaaggtatataccgttactcttacttaacattaattattaccatgaaac 680
Query: 481 atctgcatctgtcgagagttaagaggaacagaataagcagctaacaatgaaaagatttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 atctgcatctgtcgagagttaagaggaacagaataagcagctaacaatgaaaagattcct 740
Query: 541 gtgaaggctggtgagacagcttggtggtctgataacctgagttcaatccctgcagcccag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgaaggctggtgagacagcttggtggtctgataacctgagttcaatccctgcagcccag 800
Query: 601 atgacagaaagtca 614
||||||||||||||
Sbjct: 801 atgacagaaagtca 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_o20.g1 MSMg01no118_o20.g1 CHROMAT_FILE:
MSMg01no118_o20.g1 PHD_FILE: MSMg01no118_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:55 2005
(473 letters)
>mm_chr11_6171447_6172319
Length = 873
Score = 905 bits (468), Expect = 0.0
Identities = 471/472 (99%)
Strand = Plus / Minus
Query: 1 agagattggccttcctctgccccctgagtgctggaattagaggtgtgcaccactacctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agagattggccttcctctgccccctgagtgctggaattagaggtgtgcaccactacctcc 738
Query: 61 agctttagaattctcctcttaagattgaataatagtctgttgtatgtatagacctcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agctttagaattctcctcttaagattgaataatagtctgttgtatgtatagacctcatct 678
Query: 121 tgttttggatagttatttctaaattgtatgatccagtctagagaggacagtgtacaattt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 677 tgttttggatagttatttctaaattgtatgatccagtctagagaggacagtgtacacttt 618
Query: 181 agtaatcccattgcttgcttgttttccatggcctcttagtggagaaagcatggtttcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agtaatcccattgcttgcttgttttccatggcctcttagtggagaaagcatggtttcagt 558
Query: 241 cggaacagaaatggttgtaaagaatgttcctttccttcctgggggcagtctcagtggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cggaacagaaatggttgtaaagaatgttcctttccttcctgggggcagtctcagtggaag 498
Query: 301 gactagcctctgcatggaattacaggtggtattccacaggcatttggtctgaagttgtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gactagcctctgcatggaattacaggtggtattccacaggcatttggtctgaagttgtgc 438
Query: 361 ggtcacaccaatgaagggccttataatagcaggttctgttttcctgcccattctaattct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggtcacaccaatgaagggccttataatagcaggttctgttttcctgcccattctaattct 378
Query: 421 ttgttcattgtcctatgcagtatcgtgaagagcgcttccgtctgaccagtga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgttcattgtcctatgcagtatcgtgaagagcgcttccgtctgaccagtga 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
