Query= MSMg01no119_g06.b1 MSMg01no119_g06.b1 CHROMAT_FILE:
MSMg01no119_g06.b1 PHD_FILE: MSMg01no119_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:31 2005
(540 letters)
>mm_chr11_44934074_44935017
Length = 944
Score = 955 bits (494), Expect = 0.0
Identities = 527/540 (97%), Gaps = 4/540 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtatttcacacctgccccagattccaagtgaacaaagtgatttgggtgaggga 64
||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 744 gaattctgtataggacacctaccccagattccaaatgaacaaagtgatttgggtgaggga 685
Query: 65 tcacagcctaggaaaatgaagcatggttggctcactattgtcatatcacttggtggttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcacagcctaggaaaatgaagcatggttggctcactattgtcatatcacttggtggttga 625
Query: 125 gattataaaagcattatgctgagtgagttacatggccttctcaatttaaatgaacaaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gattataaaagcattatgctgagtgagttacatggccttctcaatttaaatgaacaaata 565
Query: 185 ttaacctctaaagataataaacccctgagagtaatggaaagtgtagcataaaagatggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 ttaacctctaaagataataaacccctgagagtaatggaaagtgtagcataaaagagggaa 505
Query: 245 ttgaaaatggagatggagacttccagacttgtcttgctcatttgtgttccacttaaacct 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 ttgaaaatggagatggagacttccagacttggcttgctcatttgtgttccacttaaacct 445
Query: 305 tgtcataaagtaaatagtgggc----caaagtactcatgatttactcccttcccaaatat 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcataaagtaaatagtgggccagacaaagtactcatgatttactcccttcccaaatat 385
Query: 361 gccttgtgtcagtagagcagcaacaggcttcccaggactgagctgcagctacgggagtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccttgtgtcagtagagcagcaacaggcttcccaggactgagctgcagctacgggagtat 325
Query: 421 tcaataagtctaaaatcgtgtagcattcatgatacaattacttgatgctttttgcccctg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 tcaataagtctaaaatcgtgtagcattcatgatacaattacttgatgctttttgcccccg 265
Query: 481 cagaaatgtgttacaattgggtctggagagatgtctctgcagttaaaagcagctactgct 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 cagaaatgtgttacaattgggtctggagagatggctctgcagttaaaagcagctactgct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 944
Length adjustment: 10
Effective length of query: 530
Effective length of database: 934
Effective search space: 495020
Effective search space used: 495020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_g06.g1 MSMg01no119_g06.g1 CHROMAT_FILE:
MSMg01no119_g06.g1 PHD_FILE: MSMg01no119_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:31 2005
(522 letters)
>mm_chr11_44776849_44777769
Length = 921
Score = 978 bits (506), Expect = 0.0
Identities = 518/522 (99%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 1 cactatgtctgacagtatttatctaaaatactttccctggtgcgtgttcaagttccagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactatgtctgacagtatttatctaaaatactttccctggtgcgtgttcaagttccagta 260
Query: 61 aaccgtgtcttattgtgcgaccttttcattttcctttgaaaagggatacagctcgtcaga 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aaccgtgtcttattgtgcgaccttttcattttcctttgaaaagggat-cagctcgtcaga 319
Query: 121 taaaagctacaagcccaagtacaggaaaaacgcgtgctcagaaaatccaagcatgattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taaaagctacaagcccaagtacaggaaaaacgcgtgctcagaaaatccaagcatgattga 379
Query: 181 aaacaagatgtgttaaatcaatgcggtttatcgcctgcctattcccggcaattgctgtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaacaagatgtgttaaatcaatgcggtttatcgcctgcctattcccggcaattgctgtcc 439
Query: 241 taagctcattgcgaacacacgcaggatgataaaagtccggtgtcacagcactcgctgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taagctcattgcgaacacacgcaggatgataaaagtccggtgtcacagcactcgctgggg 499
Query: 301 tggggacagaagaaaacatgtttatcacacaggctgggtgattttacactcttgataaca 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 tggggacagaagaaaacatgtttatcagacaggctgggtgattttacactcttgataaca 559
Query: 361 gttattgtcaaaactctctgggaagaaatctgaggaacaattatagaggtaacattgctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 gttattgtcaaaactctctgggaagaaatctgaggaacaattatagaggtaatattgctc 619
Query: 421 ttgatatatcagaagatccgccaggagagaattatggatttatccttaagaaagaaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgatatatcagaagatccgccaggagagaattatggatttatccttaagaaagaaagac 679
Query: 481 ggagtatgctggtcttcactccttaaacaccaccatccatta 522
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 680 ggagtatgctggccttcactccttaaacaccaccatccatta 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space: 466432
Effective search space used: 466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
