BAC Information

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BAC

Clone NameMSMg01-119G14
Chromosome11 (Build37)
Map Location 109,819,954 - 109,820,294
singlet/doubletsinglet
Overlap geneAbca8b
Upstream geneE030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492
Downstream geneAbca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119G14.T7 (MSMg01no119_g14.b1)MSMg01-119G14.TJ (MSMg01no119_g14.g1)
ACCAG330039AG330040
length709713
length of high quality
(start - end)
209 (97 - 305)344 (69 - 412)
definitionCHROMAT_FILE: MSMg01no119_g14.b1 PHD_FILE: MSMg01no119_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:32 2005CHROMAT_FILE: MSMg01no119_g14.g1 PHD_FILE: MSMg01no119_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAACGACTCCTATTTCCCACGTGCGCGGAANCNNNGTT
TTACATGACCCGATTTNNNNATGGACNANNTGAANTTCNGGAGNNCAGCT
TCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCTATCAGATTTAGGA
TTGGTAAAAAAATCCTTTAACAATCTGTTGGTGGCCTTTTTGTCTTATTG
ACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGTTTTCCCAATT
GTCAGTTCTTGATCTTACAGCACAAGCCATGGAAGGGGGAGGGCATAGGA
AATTTCCGTCATCATTATTTGAAACGNAAATAAAGAAAATATCTAATATT
TTATCCCCCCCCCACACTGTTACCATGAACAAGACTAGAGACAATGGTTA
GGAGAGCGGAGAGCAAAGAGCAAAGAGCAACTCGTGAGTCTGGGGAGTAG
TGCACTGTGCAGCAGAGAGGGAACAGTAGGATAAACACAGAGAAAACAAG
GCTAGAGCTCAACTTGCCATGTAAGGACATTGCACAAGCTGTCTCATGAT
CAGAGGGCATCAAGCGAAGTGTGCTGATGGGGAATCCTTGGCTTTTGCTC
CCACTTTACAGACCAGAAATAATTTAAGAACCACGACAAAGGACCTTTTT
TTTTATTGCCTGCCTCTAATAATGCCTTGCTTGCAGTACATCCATGCCCT
TTGAAGAAT
GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTCCAGCTCAGGGAAATAGCGCTGGTCACAG
TGTTCTTACATCAATTAGCTTAATTTAGATAACCCCTCACAGGTATCTCC
AGTAATTTGCTTCCATGAGGGTGTTGGATTCCATCAACTTGACCATCAAA
TCTGAACACCACAGGGAGAGTCAAGTTAATGCCTTATTAGTTAATTTAAA
CAAACAAACAAACAAAAAATGGTGAGTGGCTGTGTCTCTTGCTGTTGAGG
GATTTGGTAGTGCATGTTGTACATCATACTGAGATCTGTAGAATTTTGTC
CATGTTATAATCCTAAGGCACACAATGGAAAAGCCCGATTTTACCTTCAA
ATAATTTAATATTGCGAGGTGGGCAGAATACAATAAATGCTTCCCTAAAT
CGCAGATATTCGCTCAAGATAAATTGGATCCATTTAGCCATCTACACCAG
CAGTCTCAGAGAGGGTGAGCCACCCACATTTTGGAATGGCTTTCTTCAGT
CTTCTGGGTTTTTACAATGTAATTATGTCCAAGATACAGTACAAATTACA
AGACATGGGAAGAAATAGGAAAATGTAACTCACATGGAAAAAATATTTAA
AGTGAGTCTCGGCACAGGTCATCTGTCATGTTGATCTGTACACTGCGATT
ATTAGTAAGGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_g14.g1 MSMg01no119_g14.g1 CHROMAT_FILE:
MSMg01no119_g14.g1 PHD_FILE: MSMg01no119_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:33 2005
         (344 letters)



>mm_chr11_109819755_109820494
          Length = 740

 Score =  427 bits (221), Expect = e-124
 Identities = 313/347 (90%), Gaps = 9/347 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccagctcagggaaatagcgctggtc-acagtgttcttacatcaattagcttaattta 59
           ||||||||||||||||||||| ||| || | |||||||||   |||||||||||||||||
Sbjct: 200 agtccagctcagggaaatagcactgttcaatagtgttcttgtgtcaattagcttaattta 259

                                                                       
Query: 60  gataacccctcacaggtatctccagtaatttgcttccatgagggtgttggattccatcaa 119
           |||||||| |||||  |||| |||| |||||||||| |||||||| ||||||||||||||
Sbjct: 260 gataacccatcacatatatccccaggaatttgcttctatgagggtattggattccatcaa 319

                                                                       
Query: 120 cttgaccatcaaatctgaacaccacagggagagtcaagttaatgccttattagttaattt 179
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttgaccatcaaaactgatcaccacagggagagtcaagttaatgccttattagttaattt 379

                                                                       
Query: 180 aaacaaacaaacaaacaaaaaatggtgagtggctgtgtctcttgctgttgagggatttgg 239
           |||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 aaacaaacaaacaaa-----aatggtgagcggctgtgtctcttgctgttgagggatttgg 434

                                                                       
Query: 240 tagtgcatgttgtacatcatactgagatctgtagaattttgtccatgttataatcctaag 299
           ||||||| | ||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 435 tagtgcaggctgttcatcatactgagatctgtagaactttgtccatgttataatcttaag 494

                                                          
Query: 300 gcacaca--atggaaaagcccgattttaccttcaaataatttaatat 344
           |||||||  ||||||||||| ||||| | |||||| | |||||||||
Sbjct: 495 gcacacagaatggaaaagcctgattt-atcttcaagtgatttaatat 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 740
Length adjustment: 9
Effective length of query: 335
Effective length of database: 731
Effective search space:   244885
Effective search space used:   244885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)