Query= MSMg01no119_j09.b1 MSMg01no119_j09.b1 CHROMAT_FILE:
MSMg01no119_j09.b1 PHD_FILE: MSMg01no119_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:46 2005
(309 letters)
>mm_chr11_117840623_117841331
Length = 709
Score = 551 bits (285), Expect = e-161
Identities = 303/309 (98%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 1 catctgccacttccctagctggccggtcaggcctttgtccacttatcatttcagcccttg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 508 catctgccacttccctagctggctggtcaggcctttgtccacttatcatttcagcccttg 449
Query: 61 aacatccgaaaaatcttgtcatcagcaaaacaaaacatctattgctcaatggctgcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacatccgaaaaatcttgtcatcagcaaaacaaaacatctattgctcaatggctgcctca 389
Query: 121 ccgcagagcagccgtgggctctctggcattaatcaacgagaagtcaggcccaaatttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccgcagagcagccgtgggctctctggcattaatcaacgagaagtcaggcccaaatttctg 329
Query: 181 gaaatgcctcggggcagagcatcctgcctgtttcgctgtcagtgtgaggataacttcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaatgcctcggggcagagcatcctgcctgtttcgctgtcagtgtgaggataacttcaac 269
Query: 241 tgttgttttcaggggaatcttggtcc-cctgtggtgtggcaggtagccagcaccagggca 299
||||| ||||||||||||||||| || |||||||||||||||| ||||||||||| ||||
Sbjct: 268 tgttggtttcaggggaatcttgg-cctcctgtggtgtggcaggcagccagcaccacggca 210
Query: 300 cctcatgac 308
|||||||||
Sbjct: 209 cctcatgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_j09.g1 MSMg01no119_j09.g1 CHROMAT_FILE:
MSMg01no119_j09.g1 PHD_FILE: MSMg01no119_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:46 2005
(485 letters)
>mm_chr11_117684780_117685664
Length = 885
Score = 872 bits (451), Expect = 0.0
Identities = 478/487 (98%), Gaps = 2/487 (0%)
Strand = Plus / Plus
Query: 1 cagggcaaccagaggtctgtagagagttcctgtctcaaaa-aaaacaaaacaaaaaaaag 59
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 199 cagggcaaccagaggtctgtagagagttcctgtctcaaaacaaaacaaaacaaaaaaaag 258
Query: 60 atatggccaatgagtgtggaacacagatcttataacccgaggctgtcctctgaacg-ggg 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 259 atatggccaatgagtgtggaacacagatcttataacccgaggctgtcctctgaacgcggg 318
Query: 119 tgtatggttacctgtgtgcaaacacacacctccctaagaaaccaaccaaagctgggcatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtatggttacctgtgtgcaaacacacacctccctaagaaaccaaccaaagctgggcatg 378
Query: 179 gtggtgcacgcctttaatcctagcacttgggaggcagaggcaggaggatttctgagttca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtggtgcacgcctttaatcctagcacttgggaggcagaggcaggaggatttctgagttca 438
Query: 239 aggccagtatggtctacaaagtgagttccaggacagccagggcgacacagagaaaccctg 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggccagcatggtctacaaagtgagttccaggacagccagggcgacacagagaaaccctg 498
Query: 299 tctcagaaaaaaataaaagaaaccaactaaagaacataacacaacactcgggcatcttaa 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 tctcagaaaaaaataaaagaaaccaactaaagaacacaacacaacactcgggcatcttaa 558
Query: 359 attctctcttccctcccctggtagaggggaccagagagaggacaggtaacaagctggctg 418
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 559 attctctcttccctcccctggtagaggggaccagagagaggacaggcaacaagccagctg 618
Query: 419 tggtcaccactctaggcactgttgcctcctctgatttcgggcctcctggatgcacatccc 478
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 tggccaccactctaggcactgttgcctcctctgatttcggtcctcctggatgcacatccc 678
Query: 479 gtcctga 485
|||||||
Sbjct: 679 gtcctga 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
