BAC Information

Click to search

BAC

Clone NameMSMg01-119K15
Chromosome11 (Build37)
Map Location 27,739,579 - 27,739,921
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666270, LOC100042367, LOC100042377
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119K15.T7 (MSMg01no119_k15.b1)MSMg01-119K15.TJ (MSMg01no119_k15.g1)
ACCAG330225AG330226
length710713
length of high quality
(start - end)
344 (69 - 412)252 (72 - 323)
definitionCHROMAT_FILE: MSMg01no119_k15.b1 PHD_FILE: MSMg01no119_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:52 2005CHROMAT_FILE: MSMg01no119_k15.g1 PHD_FILE: MSMg01no119_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATAATTTGCGGCGCTAAACGACTACTATATTCAGAGAACCGCGGAAT
TCACAGTATATCCCTATGTTGTTAGACTTGGGAATAAATGCTTCCAACTG
ATGTTACTTTCCTTTCATTGATGATCATAATACAGTTACTTTTCTAATAG
AAAAGACACAATTTTCTTTAGAGAAACTGATACATACCTTAATTTGCTGG
GACAGAGAAGTCTGAAGAATACAATGATAACTTTCCAATGAGAATAGATA
AGATCCTCCAGAGATGTGGGGTTGCTAGCCAGACTTACTTCTAAGTAGCT
TCTTATACATGTTCAATTTAATGATATCATACAACCAAAGCTGTTATATT
TTTAACATGGATTTGTTACTATTAAAGAATGGCTATTAAATGTATCATCA
TTAAATCTAAACAGCATAGAAATGATACATGACAGACTTCATAATGCAGA
GTATGAAATAAAATATAAGTCATCCTTTCTGGAAATTTGTGAGGTCTGTG
TTCTGTGGCTGTGGCCAGTTCCTTTATCCATAGTATTAATCACAGAACTC
TAACCCCTATTGCCCATTATGACAGGTGACCTGCCTGACTCTTGCCCTCT
GATACATGGATGTGGACGTATGGATGCAGATTCTATCACCAACACATACC
AATTAAGCCCTCTAAATGAGAATTATCATTAATTTGCCGATTGGGTTTTT
ATAAGGACCC
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTATTATGTTTGATGCCAAATTCTTTA
CAAAATGAAGTAAAATTTTTGCTAGAATAGGATGGCCCATTACCTGTCTT
AATAAATTTAGGCAATCCCATAGCATTAAAGGCTTGTTGACAATGATAAA
TTACATTTTAAGAAGTCTCTCCTGTATGCAGAGAAGCAAAAAGAAATCCT
GAACAAGTATCAATACAAACATGTATGTATTCTAACTTTCCAAATACGGC
ATAATGAGTTATATCCATTTGCCTAATATGACTAGGCATTTGGCACTGGA
GATAATGCAATACACTTACGATATTGTTTTACCATCATTCCTGTCTGCTC
CTTAGTGATCTTACGTCGTAGCCTTAAGGTATGACTAGAGAGACGAAAAT
TTTCATGATCATGTTTGGCCCAATCAACACGGATCTGAAACTATGGCTCT
CTCCTATTATAGCTCTGTCGATGCAATCATTGCCTTCAGCTAAAGATTCA
GGAAGACCAGAACGTCTTCGCATGTGGTCACACTATAACGGTTGTCTGTC
CCCTCCAACGATGTTTTTGATTTGTTATAACAGTCATCCTGCTGGCTTAT
TACATGTTAAAGCATTACCGGCCTTCACATTCGTTTCCGAATTGCGCCCC
TTTATACTATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_k15.b1 MSMg01no119_k15.b1 CHROMAT_FILE:
MSMg01no119_k15.b1 PHD_FILE: MSMg01no119_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:52 2005
         (344 letters)



>mm_chr11_27739379_27740121
          Length = 743

 Score =  605 bits (313), Expect = e-177
 Identities = 337/345 (97%), Gaps = 3/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttagacttgggaataaatgcttccaactgatgttactttcctttcattgatgatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgttagacttgggaataaatgcttccaactgatgttactttcctttcattgatgatcat 484

                                                                       
Query: 61  aatacagttacttttctaatagaaaagacacaattttctttagagaaactgatacatacc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aatacagttacctttctaatagaaaagacacaattttctttagagaaactgatacatacc 424

                                                                       
Query: 121 ttaatttgctgggacagagaagtctgaagaa-tacaatgataactttccaatgagaatag 179
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 423 ttaatttgctgggacagagaagtctgaa-aactacaatgataactttccaatgagaatag 365

                                                                       
Query: 180 ataagatcctccagagatgtggggttgctagccagacttacttctaagtagcttcttata 239
           || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 364 atgagatcatccagagatgtggggttgttagccagacttacttctaagtagcttcttata 305

                                                                       
Query: 240 catgttcaatttaatgatatcatacaaccaaagctgttatatttttaacatggatttgtt 299
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catgttcaattttatga-atcatacaaccaaagctgttatatttttaacatggatttgtt 246

                                                        
Query: 300 actattaaagaatggctattaaatgtatcatcattaaatctaaac 344
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 actattaaagaatggctattaaatgtatcatcattaaatctaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)