Query= MSMg01no120_g04.b1 MSMg01no120_g04.b1 CHROMAT_FILE:
MSMg01no120_g04.b1 PHD_FILE: MSMg01no120_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:48 2005
(657 letters)
>mm_chr11_104665172_104666229
Length = 1058
Score = 1151 bits (595), Expect = 0.0
Identities = 640/655 (97%), Gaps = 3/655 (0%)
Strand = Plus / Minus
Query: 5 gaattcacatattttcatctatatgttttacttttataaattttaattaaaacatgctta 64
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 910 gaattcacatattttgatctatatgttttacttttgtaaattttaattaaaacatgctta 851
Query: 65 cattgttcctcccctttctagcctccctccagcccctcccaagtccccaccct-ctaaca 123
||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct: 850 cattgttcctcccctttcttccctccctccagcccctcccaagtccccaccctgc-aaca 792
Query: 124 ccgtcctacatcctccaacatctatattttaaa-ggcctaaaagcatgaagattaacctt 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 791 ccgtcctacatcctccaacatctatattttaaagggcctaaaagcatgaagattaacctt 732
Query: 183 tgaaacttaaagctgcattaactcaaatgcaggatttccaaaagaccttgctaagtagag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 731 tgaaacttaaagctgcattaactcaaatgcaggatttccaaaagaccttgctaaggagag 672
Query: 243 caaggggagtggatggcattgaaacacacttttcttccactactttgaaagctctttgcc 302
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 671 caaggggagtggatagcattgaaacacacttttcttccactgctttgaaagctctttgcc 612
Query: 303 atcctcggatggaaaggatactactctgataaattcaagttcaagacgtaacttttctga 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 611 atcctcggatggaaaggatactactctgataaattcaagttcaagacataacttttctga 552
Query: 363 atgtgtcacaaagctccaacacagaaaaataaatgtagttgacacctcctcatacatatg 422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 551 atgtgtcacaaagctccaacacagagaaataaatgtagttgacacctcctcatacatatg 492
Query: 423 tctaatgtgcttagataatatccataccaagagaaatgcttactgtcgattggcagattt 482
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 491 tctaatgcgcttagataatatccataccaagagaaatgcttactgtcaattggcagattt 432
Query: 483 tcttgcagattctgaaattctaggcttgtaagtgccagtcccatcttccctaagatacct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcttgcagattctgaaattctaggcttgtaagtgccagtcccatcttccctaagatacct 372
Query: 543 tctaacttctcaatgtcagctttcccaccttaagaaagatgagacaaattctttttacat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctaacttctcaatgtcagctttcccaccttaagaaagatgagacaaattctttttacat 312
Query: 603 aattcagaatggttttcatacacatgcacatagaatgtttgggcacatacattct 657
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 311 aattcagaatggttttcatacacatgcacatagaatatttgggcacatacattct 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_g04.g1 MSMg01no120_g04.g1 CHROMAT_FILE:
MSMg01no120_g04.g1 PHD_FILE: MSMg01no120_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:48 2005
(242 letters)
>mm_chr11_104588004_104588645
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 237/238 (99%)
Strand = Plus / Plus
Query: 1 ggctgagctacatagcttgtcttcacacaaacaaaacagagcacaaaatgaaacaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgagctacatagcttgtcttcacacaaacaaaacagagcacaaaatgaaacaaagct 260
Query: 61 aagaccaaggaaaacaaaaaaactggacttgatttgggatagacactcgctgcctctggg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aagaccaaggaaaacaaaaaaactggacttgatttgggatagtcactcgctgcctctggg 320
Query: 121 acagacatttcctgctgctggatctcttagcaggtcaatgccagcttgtaaaaacaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagacatttcctgctgctggatctcttagcaggtcaatgccagcttgtaaaaacaagat 380
Query: 181 gatattaagaaataaagtactttgtctgactcttacacttgagagaacctgtttaacc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatattaagaaataaagtactttgtctgactcttacacttgagagaacctgtttaacc 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
