BAC Information

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BAC

Clone NameMSMg01-120G24
Chromosome11 (Build37)
Map Location 80,710,505 - 80,774,884
singlet/doubletdoublet
Overlap geneAccn1
Upstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120G24.T7 (MSMg01no120_g24.b1)MSMg01-120G24.TJ (MSMg01no120_g24.g1)
ACCAG330806AG330807
length759758
length of high quality
(start - end)
274 (107 - 380)142 (218 - 359)
definitionCHROMAT_FILE: MSMg01no120_g24.b1 PHD_FILE: MSMg01no120_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:52 2005CHROMAT_FILE: MSMg01no120_g24.g1 PHD_FILE: MSMg01no120_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,710,505 - 80,710,755)(80,774,743 - 80,774,884)
sequence
AAAAAAAAAAAATGGGATGAAGGAAAAAANGGTGCAAACAAGAACAACAA
AAGAGAGGGTGGTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGA
GAATGCGCGGAATTCTCTGAATTACCGCACTGAATTCAAGGTCTGAGTCA
AATGTGAAGTATCTTTTCTCGAAAGTCTGGGTTTGGCTTTTTCCTAATGG
TGTCTATTTTTTCCTGCTTTTAAAACCAACTTTCCGAAGGCATAATTTGT
AGGTGATAAAATAGATCAAATTTAATGCATAACTGCCTGAATTCATTTTT
TAGATTCATTTATTTTGTGTGTACAAATGGTTTGCTCATGAACGTTATCA
CCATGTGAATAGTTTGCGCCCTCAAAGGTCATAATATAATGTCGGATCTC
CTGGAACTGGAGTTATAGGGGATTCTGAGCCACCAAGTGGGTGCTGGAAA
CCAAACTTCAGAAGTGCAGAAAGTGCTCTTAACAGCTGAGTCATCTCTCC
AGCACCTGGGGTGAACTTTTAAGAAAATGCACATCCTTGGGGGGAATCAC
TACAATCAGGATTTAAAACATCTAATCTCCCCCAAAGCTGCCCACTTACA
CCAATCTCCTTTGCCGATTCTCAGGAAGCCTTCTGTCTAATTTTGCCTTT
ATAAATGATTTTTATCTGTTGCAACATCCCATATTGTTAGAATGACAGAG
TTACGTATTTCCCCCTGGATGGAAACGTTTCTCTCAGAAAAATGTTTTTG
ACATCTATT
AATAGGGGGGTGGTGGATGTGGGGGCGTGTTGTATCTCCCACCCTCCCCC
AAAAACTTTGTGCTATGATATGGGAGGCCTGGNGGCCGCCTGTTTCCCAC
CGGGGGNGAGCTATGGNAGTTACAAAAAAATCTGAGTGGAGNCCAGAGCA
CACTGACATGGAGCCACCAGCTGAGATGCCCTGCTTATGCTTAAAGAAGG
GCTTTGTGCTGAGTGGACATCTCCACAGGTGCCTGAAGACTCGGAAGGAA
TGATGCTATAAATTAGATGCACTGCTGGAAGCAGGCATCTATGGAGCAAC
CTGATTTTTATCATGCTGGAGACCTGCTAAGTGTGGTGCAAAAAGCATAT
ATGATCTCGTAGAAGGTCCCAACCTTTTTTTTTTTCTGCCCAAAGAGAAT
ACCTAGGGAGCTGAAAAAACATACCCCCTACCCTGCTTAGGGGATCTTCA
TTGTGCACCCACTGTGTTCTCGGCCACCTCCGGAATACAGGCAGAACCCC
AGGGAGGGTTGTAAGAGTACATAAGCTAGGGACTTTCTGGGGAATTCACA
TATGATTCTGCCACAGTTAGACATCCTTTCTCCCTACAGCTTTCCCATCC
AATGTCCAAGGCGTGGCCAAGTCTTCACATAAAAGCCGTTAAACAGCTCT
GATCACTATACTAGAAACACACATGGGAAGGAGGCGACAGATACAGAGGG
GAGGCAGAAGAGCAATGAATTGTTAAAAGTGCAGGGGGGGTGAAAATGAA
ATGCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_g24.b1 MSMg01no120_g24.b1 CHROMAT_FILE:
MSMg01no120_g24.b1 PHD_FILE: MSMg01no120_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:52 2005
         (274 letters)



>mm_chr11_80710282_80710955
          Length = 674

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 24  ctgaattcaaggtctgagtcaaatgtgaagtatcttttctcgaaagtctgggtttggctt 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctgaattcaaggtctgagtcaaatgtgaagtatcttttctcgaaagtctgggtttggctt 283

                                                                       
Query: 84  tttcctaatggtgtctattttttcctgcttttaaaaccaactttccgaaggcataatttg 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttcctaatggtgtctattttttcctgcttttaaaaccaactttccgaaggcataatttg 343

                                                                       
Query: 144 taggtgataaaatagatcaaatttaatgcataactgcctgaattcattttttagattcat 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 taggtgataaaatagatcaaatttaatgcataactgcctgaattcattttttagattcat 403

                                                                       
Query: 204 ttattttgtgtgtacaaatggtttgctcatgaacgttatcaccatgtgaatagtttgcgc 263
           ||||||||||||||| ||||||||||||||||  ||||||||||||||| ||| ||||||
Sbjct: 404 ttattttgtgtgtacgaatggtttgctcatgagtgttatcaccatgtgagtagcttgcgc 463

                      
Query: 264 cctcaaaggtc 274
           |||||||||||
Sbjct: 464 cctcaaaggtc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no120_g24.g1 MSMg01no120_g24.g1 CHROMAT_FILE:
MSMg01no120_g24.g1 PHD_FILE: MSMg01no120_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:52 2005
         (142 letters)



>mm_chr11_80774543_80775084
          Length = 542

 Score =  259 bits (134), Expect = 4e-74
 Identities = 140/142 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctccacaggtgcctgaagactcggaaggaatgatgctataaattagatgcactgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 catctccacaggtgcctgaagactcggaaggaatgatgctataaattagatgcactgctg 283

                                                                       
Query: 61  gaagcaggcatctatggagcaacctgatttttatcatgctggagacctgctaagtgtggt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaagccggcatctatggagcaacctgatttttatcatgctggagacctgctaagtgtggt 223

                                 
Query: 121 gcaaaaagcatatatgatctcg 142
           ||| ||||||||||||||||||
Sbjct: 222 gcagaaagcatatatgatctcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)