BAC Information

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BAC

Clone NameMSMg01-120I14
Chromosome11 (Build37)
Map Location 100,906,893 - 100,907,129
singlet/doubletsinglet
Overlap geneAtp6v0a1
Upstream geneKrt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneNaglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120I14.T7 (MSMg01no120_i14.b1)MSMg01-120I14.TJ (MSMg01no120_i14.g1)
ACCAG330881AG330882
length793780
length of high quality
(start - end)		371 (119 - 489)237 (129 - 365)
definitionCHROMAT_FILE: MSMg01no120_i14.b1 PHD_FILE: MSMg01no120_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:00 2005CHROMAT_FILE: MSMg01no120_i14.g1 PHD_FILE: MSMg01no120_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATAATAAACGTGATAAAGATAACGAAAAGTCAGCCAAGCCTCCACTTC
AAAAATTCTATAATTGCGGCGCTATACGACTCACTATTCGAGAGGGGCGC
GGAATTCCAGCCATGCCGCAAAGGGTTGAACTCCGGTCCCCAGGCTCGGC
AGCAAATGCCTTTACCCAGTGAGCCTTATTGCCAGGTCATAGTTCTAGTT
CTGGAAAAGATTATCAGTGAATAGACAGTAGCAACAGGTGCTAGGTGTGC
TGACACACACTTTTAGGCAGAGGCAAGAGGATCTCTGAATTCGTGGACAG
TCAGGGTTATACAGAGAAACCCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTGCTTGCTTGCTTGCTTGCTTGCTTTCTTTCTCTTTCTT
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TATCATTCTAAATTCCTCTCTAGCGTCCCCAACAACCGCTTTCTTTGCAC
TCTCTCGTTTTGGACGGGTATTCTCTCCTGCCATAACGTTTATCTTCAGA
ACGCCACCCCCTGTTTAGTCCCCCCTTTATATTAATTGCCCCCTTTTTAT
TTCACTGCGCCGCCCTCACCACACGCTTCTTTCAAGAATTGGCTTCGAGC
AATTTTTATGCGCTAACCTCCTCATTTTTCTATTCATCCCCCCTCTTTTT
CGATTTCTTGCATTCGCCTGCCAGCGGGCATACCTAATTTGAA

TATAATATATTTTTTGTCGTTGGCCCCCTCTTTTATCTTTTGCGCTTTTT
ACAAAAATCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTATCGCTGTTGAGAGCG
TGGCATGTGTGCTCACTGAGACCATGACAGAGGAGCCATCTGCCTCTTAG
GAATAGATCAGGTATCGTCTTTACCATTGGCCTGCTAAGTTTCTGTTTGG
TTGTGTAAGTACAATCCTATCTTCAGGAGCCAAGTGGCCCTCTTCGAGTC
CCATCATCTTACTCCAAGACGGCAGCTTCTGGGCTCATCCACTTTTGTGT
CTGTATCCTGTGATCGCGTGTGGCGTGTGTTTTCAGCATGGATACAAGAG
GGGCTTGGACTCTTTCATTGATGTCTTTGTTCTTTGTGCTTGTAAGCCCT
TCTTTAAGGGATCCTTCGTCTTGTTTTGGGAGCCCAGTCTTTAGAGAAGG
TCTGCATCTCTTTCCCTAACTGGGACACAGAAGGTCTTCGTTTCTTCAGC
TGACTTATTGAGCCCCCCTGCGTGCTGCACATCTGCTAGAGTCATCCTGT
TTAGAGCCTCCCTTCTTCTGTACCCACAATTCCGTGATATATCTTTGAAC
GTTAGACTCCTGACTTCATTTTACCTATATTCTTACAGTGTACCGCGGCT
TTCCAAGCTCACTTCTGAAAACTTTCTATCTCACTAGCCAGGGCACTGTT
CTGTTTACCTAATATTGGTTTTTAGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_i14.g1 MSMg01no120_i14.g1 CHROMAT_FILE:
MSMg01no120_i14.g1 PHD_FILE: MSMg01no120_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:00 2005
         (237 letters)



>mm_chr11_100906693_100907329
          Length = 637

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%), Gaps = 2/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttt-atcgctgttgagagcgtggcatgtgtgctcactgagaccatgacagaggagcc 59
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttaat-gctgttgagagcgtggcatgtgtgctcactgagaccatgacagaggagcc 259

                                                                       
Query: 60  atctgcctcttaggaatagatcaggtatcgtctttaccattggcctgctaagtttctgtt 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 atctgcctcttaggaatagatcaggtatcgtttttaccattggcctgctaagtttctgtt 319

                                                                       
Query: 120 tggttgtgtaagtacaatcctatcttcaggagccaagtggccctcttcgagtcccatcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggttgtgtaagtacaatcctatcttcaggagccaagtggccctcttcgagtcccatcat 379

                                                                     
Query: 180 cttactccaagacggcagcttctgggctcatccacttttgtgtctgtatcctgtgatc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttactccaagacggcagcttctgggctcatccacttttgtgtctgtatcctgtgatc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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