Query= MSMg01no120_k14.b1 MSMg01no120_k14.b1 CHROMAT_FILE:
MSMg01no120_k14.b1 PHD_FILE: MSMg01no120_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:11 2005
(518 letters)
>mm_chr11_106313645_106314562
Length = 918
Score = 946 bits (489), Expect = 0.0
Identities = 507/513 (98%)
Strand = Plus / Minus
Query: 6 aatgctctctgctatcctcttactgctcagctggccatcaggtcctgttgtgcagattca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aatgctctctgctatcctcttactgctcagctggccatcaggtcctgttgtgcagattca 659
Query: 66 ggaagtaccttccaaatctgactgtcactcctctcagtctccaggtcacagccaggcttg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggaagtaccttccaaatctgactgtcactcctctcagtctccaggtcacagccaggcttg 599
Query: 126 tggcatctacctcctagattcatgtggcagtctgctgaccactgtccggattccccacgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tggcatctacctcctagattcatgtggcagtctgctgaccactgtccggattccccacgt 539
Query: 186 tctcttgcttgtaatagcctcccatttgcctgtcatactgccattagattcacacacaca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctcttgcttgtaatagcctcccatttgcctgtcatactgccattagattcacacacaca 479
Query: 246 cacccttcaagggacattgtgctgcctccagtgcttgccaccgatatccatgcggagagt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacccttcaagggacattgtgctgcctccagtgcttgccaccgatatccatgcggagagt 419
Query: 306 gtgccacctgtgcacaaagagaggaaagggagtgtgagcaccctcaatggggtcgtttca 365
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 418 gtgccacctgtgcacaaagagagaaaagagagtgtgagcaccctcaatggggtcgtttca 359
Query: 366 gttttggaccctgtaccacagctagtctgagaggactggctcatgtggtcaggtctgagc 425
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 358 attttggaccctgtaccacagctagtctgagaggactggctcatgtggtcatgtctgagc 299
Query: 426 tcataggacgcctgtgagacccatcagtctgatcactcacatctcaagcctcactccttt 485
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcataggacacctgtaagacccatcagtctgatcactcacatctcaagcctcactccttt 239
Query: 486 gactggcacagaactccttactaggtctcagca 518
|||||||||||||||||||||||||||||||||
Sbjct: 238 gactggcacagaactccttactaggtctcagca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_k14.g1 MSMg01no120_k14.g1 CHROMAT_FILE:
MSMg01no120_k14.g1 PHD_FILE: MSMg01no120_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:11 2005
(468 letters)
>mm_chr11_106313032_106313900
Length = 869
Score = 868 bits (449), Expect = 0.0
Identities = 464/469 (98%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 1 cttaag-aatagaactactaagaaaatgtcatcgccacatttcataatttccccatctaa 59
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cttaagaaatagaactactaagaaaatgccatcgccacatttcataatttccccatctaa 260
Query: 60 tgctctgtcactctttctgcagatctgactgttcctcagaacacacactcaacctaacag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctctgtcactctttctgcagatctgactgttcctcagaacacacactcaacctaacag 320
Query: 120 gtactacaaaaggcagaaaaagctgtgtgaaattcaagaagccagaactacctgtcacca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactacaaaaggcagaaaaagctgtgtgaaattcaagaagccagaactacctgtcacca 380
Query: 180 cagtggtacaagtgtcagggactgacgcatgcaaggaggcaaagcaagtcccacacactt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtggtacaagtgtcagggactgacgcatgcaaggaggcaaagcaagtcccacacactt 440
Query: 240 ccaaggactcacaaaagacacttggtcagaagggtcctgggaaccaaattggcattaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaggactcacaaaagacacttggtcagaagggtcctgggaaccaaattggcattaaat 500
Query: 300 gcctcagatattaactgagcccttcagtagtcaagaggccccatcaagaaagagaaatct 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gcctcagatattaactgagcccttcagtggtcaagaggccccatcaagaaagagaaatct 560
Query: 360 ggcagaagacaaaaccccagcacaagctggaagaccttcattcactgcaatgaagagttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcagaagacaaaaccccagcacaagctggaagaccttcattcactgcaatgaagagttt 620
Query: 420 caaagcccacatgaggaagggcctacactttgcctgtagactaagaagg 468
|| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cagagcccacatgaggaagggccttcactttgcctgtagactaagaagg 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
