Query= MSMg01no120_p16.b1 MSMg01no120_p16.b1 CHROMAT_FILE:
MSMg01no120_p16.b1 PHD_FILE: MSMg01no120_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:36 2005
(551 letters)
>mm_chr11_3103973_3104917
Length = 945
Score = 926 bits (479), Expect = 0.0
Identities = 526/545 (96%), Gaps = 8/545 (1%)
Strand = Plus / Plus
Query: 8 gaattcattcttatctcattgctgaagattacagagtggttacctgtctattacagtttc 67
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcattcatatttcattgctgaagattacagagtggttacctgtctattacagtttc 267
Query: 68 tggaaatatgtttgtatgtggtacccgcttgcttcagcctgagtgtgaatttagaggtgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggaaatatgtttgtatgtggtacccgcttgcttcagcctgagtgtgaatttagaggtgt 327
Query: 128 ttatagctgtttttaaactggttgtcttactgtcttctctgactagaaagcacagcacgg 187
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttacagctgtttttaaactggttgtcttactgtcttctctgactagaaagcacagcacgg 387
Query: 188 ttataggcagtaaagagaacacatctgtggcatatgggctgctgagtgcttctcaacaca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttataggcagtaaagagaacacatctgtggcatatgggctgctgagtgcttctcaacaca 447
Query: 248 ttaacaagttgcagggaactgtaacttatttctaccttctcaaatgtctcgggctagagt 307
||||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 448 ttaacaagttgcagggaacggtagcttagttctactttctcaaatgtctcgggctagagt 507
Query: 308 gtataagtgctcctgaagggaaagtcttgaga-ctgctgtgacaggcattatgctttagt 366
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 508 atataagtgctcctgaagggaaagtcttga-agctgctgtgacaggcattatgctttagt 566
Query: 367 tgagcccatgtcctcatttccttgctatgaacacgatgatgaacgtcagcatggcctatt 426
|| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 567 tg------tgtccttatttccttgctatgaacacgattatgaacgtcagcacggcctatt 620
Query: 427 gtccctggcctgctgggacacttactaaagctaggctactgcctttacttttccctagtt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccctggcctgctgggacacttactaaagctaggctactgcctttacttttccctagtt 680
Query: 487 ggtataaagtgtcaggtggtgtcaggtagccattttcagaattaaagagagaatggatgg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtataaagtgtcaggtggtgtcaggtagccattttcagaattaaagagagaatggatgg 740
Query: 547 ttaaa 551
|||||
Sbjct: 741 ttaaa 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 945
Length adjustment: 10
Effective length of query: 541
Effective length of database: 935
Effective search space: 505835
Effective search space used: 505835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_p16.g1 MSMg01no120_p16.g1 CHROMAT_FILE:
MSMg01no120_p16.g1 PHD_FILE: MSMg01no120_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:36 2005
(141 letters)
>mm_chr11_3247995_3248535
Length = 541
Score = 265 bits (137), Expect = 8e-76
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 1 cttgtctgtgaagagctcttgccttggaacaggcccctaaaacagtttgctgatcccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttgtctgtgaagagctcttgccttggaacaggcccctaaaacagtttgctgatcccact 282
Query: 61 ttacaacgcggacgggctgcagggtctttaatccacataggtagcatggggccagggttc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttacaacgtggacgggctgcagggtctttaatccacataggtagcatggggccagggttc 222
Query: 121 ctcagacagcccttagttaga 141
|||||||||||||||||||||
Sbjct: 221 ctcagacagcccttagttaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space: 70889
Effective search space used: 70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
