BAC Information

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BAC

Clone NameMSMg01-121G03
Chromosome11 (Build37)
Map Location 39,168,813 - 39,285,743
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121G03.T7 (MSMg01no121_g03.b1)MSMg01-121G03.TJ (MSMg01no121_g03.g1)
ACCAG331511AG331512
length670749
length of high quality
(start - end)
287 (48 - 334)454 (132 - 585)
definitionCHROMAT_FILE: MSMg01no121_g03.b1 PHD_FILE: MSMg01no121_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:08 2005CHROMAT_FILE: MSMg01no121_g03.g1 PHD_FILE: MSMg01no121_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,285,460 - 39,285,743)(39,168,813 - 39,169,266)
sequence
TACCATTCTCGAGAGATCCGCGGAATTCTTGGGTTTCAAAAAATCAGGCT
CCAGGGGAACCTGTACATGGAAGCACTGTGCATTTATCTATCTCTGACAA
AAATAACAGAACCCAGTTTTTAACTTCACTAAACACCAGGCAGAAACCTT
TCATTTTTGCTTGTCCCATGTCATGATTTCATTTATTCCTGAGTAACAGG
ATCACTGACAGTTGGGTTTGTGCTTTCTTCCACAATATAGTTTCCTTATT
TTATGCAAGTTTGTCTTTATTTGCATTTGAATTGAATAAGGATGTGTGGT
ATGAAGTCTATCAGTATTTTTCTATCATATAGCCTTATAGTATCCCTTTT
CATTCTTTTTATGTTTGAAAAAGATTCTGTGTTTCCGGATGCCTTGCCTG
CTTGTGTGCTTGTGCATAATGCCACAACAGTGTGACAGATACCCTAAAAC
TGGAGTAACAGATGCTTGACCACTGCCATTTGGGTGCACCAGTACCCTAG
AAGTCCAGAAAGTGTTCTGAACCTGACTCATCTTTTCTCTGCAGAGTGTG
AAAATTTCACATGAGTTACAATCATTCTATGTGTAAATGCTATGTTATGT
TGGCGTCTGTACCAAAGAAAATAGGAATATAGGATGAACTATGATTTATA
TAAGAACCTGTCATGAATAA
NGGAAAAAAAAAAAAAGANGGAAAACCCCNAAAAACAACCNNNCCCCCTT
CAAATAANAACACTATGACTATGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTCTGAGAAATTCCATGACAGCCAGAGCT
ATGCAAAGAAACCCTGTCTCAACCCCACCAGCCCCCCAAAAATTCAAAGG
CTGCTACAGATATTTCCATATGTATAAGTATTGGAACAGCCTCTTTTGCA
ATTGCTGAACAATTTGATAAAGATTTATAATTCACTATGTATTTTGTGTT
CATCACTTTGAATACAGGCACAAAGGATGGAGCTATGGTTTGCACTCTCC
CATAATTTAGTTGGATATTAAATAGACACACAATTAGCATCACCTGTAGT
TGGCGTGCTAATAAGACAAGTTAATTTATCAATTATACTGCAAAATCTGC
TGAGGTTAGGGAGAAAGAGTCGAAGCATATAGAGCCCACGAATTCTTTAA
GAAAAATTTCAGTTATAAACTAGAATTTATAACAGCAGGCATTGTCTTCT
AGACATGTTCTTCTAGCTGAGATGCCTTTTCTGGCCTCAGTAGCAGAGGA
TGCTTGTAACCTTACATAGACTTTATGTACCAGGATTGAGTGATACCCAG
GGTGCCCCTATCCACTCAGAGTAGATGTATAGAGGGGCGGGGGAGGATTT
TGTAAGTGGCTAACTGTTAAGGGCGCAGTGAACAAGATATAAAATGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_g03.b1 MSMg01no121_g03.b1 CHROMAT_FILE:
MSMg01no121_g03.b1 PHD_FILE: MSMg01no121_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:08 2005
         (287 letters)



>mm_chr11_39285257_39285943
          Length = 687

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ccaggggaacctgtacatggaagcactgtgcatttatctatctctgacaaaaataacaga 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 ccaggggaacctgtacatggaagcactgtgcatttatctatctctgacaaaaataataga 428

                                                                       
Query: 64  acccagtttttaacttcactaaacaccaggcagaaacctttcatttttgcttgtcccatg 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 acccagtttttaacttcactaaacaccaggcagaaacctttaatttttgcttgtcccatg 368

                                                                       
Query: 124 tcatgatttcatttattcctgagtaacaggatcactgacagttgggtttgtgctttcttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcatgatttcatttattcctgagtaacaggatcactgacagttgggtttgtgctttcttc 308

                                                                       
Query: 184 cacaatatagtttccttattttatgcaagtttgtctttatttgcatttgaattgaataag 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 cacaatatagtttccttattttatgcaagtttgtctttatttacatttgaattgaataag 248

                                                       
Query: 244 gatgtgtggtatgaagtctatcagtatttttctatcatatagcc 287
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gatgtgtggtatgaagtctatcagtatttttctatcatatagcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_g03.g1 MSMg01no121_g03.g1 CHROMAT_FILE:
MSMg01no121_g03.g1 PHD_FILE: MSMg01no121_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:08 2005
         (454 letters)



>mm_chr11_39168613_39169466
          Length = 854

 Score =  832 bits (430), Expect = 0.0
 Identities = 448/454 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccatgacagccagagctatgcaaagaaaccctgtctcaaccccaccagccccccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttccatgacagccagagctatgcaaagaaaccctgtctcaacctcaccagccccccaaaa 260

                                                                       
Query: 61  attcaaaggctgctacagatatttccatatgtataagtattggaacagcctcttttgcaa 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaaaggctgctacagatatgtccatatgtataagtattggaacagcctcttttgcaa 320

                                                                       
Query: 121 ttgctgaacaatttgataaagatttataattcactatgtattttgtgttcatcactttga 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctgaacaatttgacaaagatttataattcactatgtattttgtgttcatcactttga 380

                                                                       
Query: 181 atacaggcacaaaggatggagctatggtttgcactctcccataatttagttggatattaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaggcccaaaggatggagctatggtttgcactctcccataatttagttggatattaa 440

                                                                       
Query: 241 atagacacacaattagcatcacctgtagttggcgtgctaataagacaagttaatttatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagacacacaattagcatcacctgtagttggcgtgctaataagacaagttaatttatca 500

                                                                       
Query: 301 attatactgcaaaatctgctgaggttagggagaaagagtcgaagcatatagagcccacga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 attatactgcaaaatctgctgaggttagggagaaagagtcgaagcatatagagcccatga 560

                                                                       
Query: 361 attctttaagaaaaatttcagttataaactagaatttataacagcaggcattgtcttcta 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 attctttaagaaaaatttcagttataaactagagtttataacagcaggcattgtcttcta 620

                                             
Query: 421 gacatgttcttctagctgagatgccttttctggc 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 gacatgttcttctagctgagatgccttttctggc 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)