BAC Information

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BAC

Clone NameMSMg01-121G16
Chromosome11 (Build37)
Map Location 11,923,966 - 11,924,206
singlet/doubletsinglet
Overlap geneGrb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121G16.T7 (MSMg01no121_g16.b1)MSMg01-121G16.TJ (MSMg01no121_g16.g1)
ACCAG331537AG331538
length811705
length of high quality
(start - end)
47 (106 - 152)241 (67 - 307)
definitionCHROMAT_FILE: MSMg01no121_g16.b1 PHD_FILE: MSMg01no121_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:11 2005CHROMAT_FILE: MSMg01no121_g16.g1 PHD_FILE: MSMg01no121_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCCCGGTCTTTTTTTTTTTTTTTTTTGCTCTCTCTGTGCCNCCATAAA
CTTATACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTTGTTCCTCCTGAGGGAAGGGAAACACAGGGCTCCA
GGAGGGAACAATGTTGAGATAAGGAAGCCCCATAGGTTTGAGATATGCTT
GTGCGAATGTGTGTGTGCGTGCATATATATACACCCATATCCATATTCAT
ATACTTATACATATACTTATACTCATACACATACACATACATATACACAT
ACACATACAATTACACATACTTATACTCATACACATATACGTCTACTTCT
TATACGCCATATCCACTATATTTATATTTTTTCTTACCCTATCTTTTATT
TATACCTCCACTTATTATTTGTTTTTCCCCCCCCCCCCCCCTCTTTTTGT
TCTCCTTTAAAGGTTCTCCTCCCCCTCCCCTTAATATAAATTATTTTTTT
TACCGCCGGGGGCCATGTATAATATTTACGCTATTTATTCCCCCCGCCCT
CTTCCCTCTTTTTTTACCTTTTTTCTTTTTTTTTTTCCCCTCCCCATTTT
TTTTCCTTTCCCTCCTTATCCTCATTATGTGCGACTTCTCTACTCCGATT
ATTTATTACATCATCCCCGGTCTTCATCTTTTATTACCTCTTTTCGCCTT
CATTATTTAGTTTTTCCCCCCCTCCCTCCCTTCCTTTTTTTTCCCCCCCC
CTATACTTGTTTTATTATTACCCCCTCTTCTTATTTCTGCTCTTCATATA
ATCCCCTCCCG
AATGATGTGGGAGGCCTGGCGGCGCCTGTTTCAAACAGGGGGTGAACTAT
AGAATGTCAGCAGAATTCCTGTTGTGCTTCTTGCCACTCCCCATGTCTGG
ACTAGAAATCAGGGATTATAGCTCCTGCCTAGCAGTATTAAGAATTGCGT
ACTAACGGTTAGAAGAAGGCAGCAGATGGAGTTAATGGCAATTTCACTAC
CAGTCTGAAGGGGGTAGGAGTAGTGCCAGATTGGTAGAATTAAAATGTGA
GTTATTTTTGTTCTTAAACCCTCTCCTAAGGATTTCCATCACCGGTTACT
CTTCTCAGTGTCATGTAATTACCACCCAGAACTGAGCTTTGGAAATTTCA
GAGAACAGTGCCTCTTTTGAATTTTAGAATTAGGTGACATTTGGGCGACA
GTCTGAATTCACTGACTTTCAACCTTTGTGGTCCCACAAAAACCAGACAG
TTCCATACTTATGACGTAGAAAGAATGCCTTATGAAGCTTTCTTGGGTTA
GCACAGGTGAACGTGCCATTGTAGACCTGGGGGACTGTGGTCTGATGATA
CCCAGGGTAGCAGGGTATTAGGCAGAGGTGGGAAGGGGTATGACCTTGGA
GCACATACTGCCCAGCCCACATCTTTCGACTCCATTTACCCCTTGCTGCA
TCACAAATGGAATCTACTACCTTCCCTGTGACGCCCGCTGGAGACTCTTT
AGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_g16.g1 MSMg01no121_g16.g1 CHROMAT_FILE:
MSMg01no121_g16.g1 PHD_FILE: MSMg01no121_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:11 2005
         (241 letters)



>mm_chr11_11923766_11924406
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgttgtgcttcttgccactccccatgtctggactagaaatcagggattatagctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgttgtgcttcttgccactccccatgtctggactagaaatcagggattatagctcct 382

                                                                       
Query: 61  gcctagcagtattaagaattgcgtactaacggttagaagaaggcagcagatggagttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagcagtattaagaattgcgtactaacggttagaagaaggcagcagatggagttaat 322

                                                                       
Query: 121 ggcaatttcactaccagtctgaagggggtaggagtagtgccagattggtagaattaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaatttcactaccagtctgaagggggtaggagtagtgccagattggtagaattaaaat 262

                                                                       
Query: 181 gtgagttatttttgttcttaaaccctctcctaaggatttccatcaccggttactcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gtgagttatttttgttcttaaaccctctcctaaggatttccatcaccggttacacttctc 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)