BAC Information

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BAC

Clone NameMSMg01-121L04
Chromosome11 (Build37)
Map Location 59,417,385 - 59,417,679
singlet/doubletsinglet
Overlap genenone
Upstream gene2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221
Downstream geneOlfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L04.T7 (MSMg01no121_l04.b1)MSMg01-121L04.TJ (MSMg01no121_l04.g1)
ACCAG331745AG331746
length719816
length of high quality
(start - end)
294 (70 - 363)58 (76 - 133)
definitionCHROMAT_FILE: MSMg01no121_l04.b1 PHD_FILE: MSMg01no121_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:33 2005CHROMAT_FILE: MSMg01no121_l04.g1 PHD_FILE: MSMg01no121_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACTGCCAGGGCTACACAGAGAAACCCTGTCTCAATCAAT
CAATCAATCAATCAATCAATAAATAATCTACCCAGCAAAAAAATCTCAAG
TGTTCTGTTGAAGTGATTTTGTTGAGTTTGAAGTTTATTGTTTTCCTTAA
GGAAGACATCAGACTGCCCACATCACAACCTTAGTTGTGAATCCTGGGAA
CTTGATGACACCACAGACTATCTCAACTCTGGTTTATGAATTCTTTTTTT
TTTTTTTTTGGGTTGGTGTCATGTGTGTAGCTCACTCCCCAGAGCAAATA
TGATTCTAGACATTTCAAATTACCCGGACCTCAGATCCCACTAGCTTCCT
CTGCTCTACAAATAGATCCTAGACTTAATTAGGTATACAAGACAACTCAC
CTTAGGTCTCAGAGGATGCAAGGGGTAAGTCTCATAAACCCCAGCTCCCC
TCGACATCATCAAATTCCACTTGCCAGCTGGGCTGTGGCTACTCTGCCTA
TTCGTCCTGAAGAAAAATTGCCTCTCTGGCTAACGTCTCAACTTCCACAT
TTGCTTGCTCCTTGCTCTACATCCCTTCCCTTCTTCCTCAATCTGGGTAA
ATCGTATGGTCTTCCAAGGCCTCCACGGGGCGGCAAATATAATACCTTCC
CCTTCCTATCTTAACTCAA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGCAGATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATAGGTGCCCCCCTTCCTTCCTCTTC
CCTCTTCTCTCCCCCCTCTCCCGGTCGCTGCATTACACTCTTCCTCTCTC
TCTCTTTTATCCCCTTCTTTCTACCCCTATTTTTCCTCTTTACACTCGCC
CACATACAACCACCACTCTCACTCCTCCTAACAATAACCCACCAACCACA
TTTTTCTTTTCGCACCGCGCCTATCCCCAAACATACCCACAACCCTTTTT
TCCCCCTCAAGCCTCCCCACCCTATAACAACCCCCAAAACTATTTTTTTT
TCCCCCCANGCAANCCCCTCTCCCTATAAACATAAGAATTGACCCAATAC
AGAATCGCTCCCAAAATAAAAAAAAAACAACAATACCGCCGTGGGGGGGG
ACGCTCCCCATAAACCACAATCTCCCCCCGACCTCCACCCGCCCACCCTT
ATTTCGTCATTCTTCCACCACACTCCCCGACCACACCCCGCCACCACATA
CCCCAACTTCCCTATTACCCCCCCCACCATATCCTCCCCCTTTATCCCAT
CCCCTCCCATCCTCCCCTATTCTCACTACCCTCCACCCCCCTCAATCTAC
CACCCACAAACCCCACTACACAACCCCATCCTCATAATCCCCGCCCCATC
CTATACATTTTCTCCCACCCCCTACCCACCCCTCTCTCCCTTCCCTATCA
CCCCACTCCATCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l04.b1 MSMg01no121_l04.b1 CHROMAT_FILE:
MSMg01no121_l04.b1 PHD_FILE: MSMg01no121_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:33 2005
         (294 letters)



>mm_chr11_59417130_59417825
          Length = 696

 Score =  536 bits (277), Expect = e-157
 Identities = 290/295 (98%), Gaps = 2/295 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctacacagagaaaccctgtctcaatcaatcaatcaatcaatcaatcaataaataatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 550 ggctacacagagaaaccctgtctcaatcaatcaatcaatcaatcaatcaatcaataatct 491

                                                                       
Query: 61  acccagcaaaaaaatctcaagtgttctgttgaagtgattttgttgagtttgaagtttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acccagcaaaaaaatctcaagtgttctgttgaagtgattttgttgagtttgaagtttatt 431

                                                                       
Query: 121 gttttccttaaggaagacatcagactgcccacatcacaaccttagttgtgaatcctggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gttttccttaaggaagacatcagactgcccacatcacaaccttagttgtgaatcctggga 371

                                                                       
Query: 181 acttgatgacaccacagactatctcaactctggtttatgaattctttttttttttttttt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 370 acttgatgacaccacagactatctcaactctgttttatgaattctttttttttttttttt 311

                                                                  
Query: 241 --gggttggtgtcatgtgtgtagctcactccccagagcaaatatgattctagaca 293
             || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttggtttggtgtcatgtgtgtagctcactccccagagcaaatatgattctagaca 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 696
Length adjustment: 9
Effective length of query: 285
Effective length of database: 687
Effective search space:   195795
Effective search space used:   195795
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)