BAC Information

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BAC

Clone NameMSMg01-121O09
Chromosome11 (Build37)
Map Location 72,321,524 - 72,321,764
singlet/doubletsinglet
Overlap gene9830002I17Rik
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a
Downstream geneLOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121O09.T7 (MSMg01no121_o09.b1)MSMg01-121O09.TJ (MSMg01no121_o09.g1)
ACCAG331895AG331896
length688762
length of high quality
(start - end)
281 (42 - 322)240 (125 - 364)
definitionCHROMAT_FILE: MSMg01no121_o09.b1 PHD_FILE: MSMg01no121_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:50 2005CHROMAT_FILE: MSMg01no121_o09.g1 PHD_FILE: MSMg01no121_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCGAGAGATCCGCGGAATTCCTTACCTTTCGGACAATGCACATCTATC
TAGTGGAGATGACGCACAGCTTAGCATCTTGAGCTCATTTTTGATGATAT
TTATATGGATGAGCAGGTAAAGGCACTTTTCATCAAGCCTGAGAGACTAA
ATTCAATCCCAGGGACCCACCTGGTAGAAAGATACAAGGGACTCCCACAA
GCTGTCCTCTAACCTTCTCTATACACGAGTCAAGACATGAGCACCCCCCC
CCCAAATAAATGTTAAAATAAATAAATAAATAAGATCGCTTGCTGTGACC
CTAACACAAACAAGGGGTCAAGGTCAAAGAACAGGAGACCCCCAGGAAGA
GATCATTGTTCTTCAGTCTGAGGGGCGGTACGAGCCAAATCAGGTGACAG
GCAGTGTCTTATTTGGCTTTCTGTTGCTGCGATAAAACACTAACCAAGAA
TGAGGTTGAGTGAGGAGAGGATTATTCCGCTTACTAGGTTACATTGTATC
ACCCAAGACAGGCAAGGCAAGAACTCATGGTGGGAATATGGAAGTGTGTG
TGTGTGTGTGTGCCATTCTATCATTCCCTGCACCGTAGTATTGAACACTC
CGCCCCGCCCTGGTGTTTTCTTATACAACCTAATACACCTTCCCCATATT
ATCTAAACTATCCCCACCCCTCACCCTCTCTCTCATTT
AAAAAAATTTAATATAATTTATAACCTAACCACCATTCCTCCCCTTTCTA
TTTTCGATGCTATGGGTAGCCTGGAGGCGCCTGGTCGNCACTGGAGGTGA
ACTATAGAAGTTCCCAAAAATCGCTAGCTAGNACACACGTCTTTTGATAT
TTTATGTATCTCCTCTGTTGCCTTCATATGTATATACATGTGGTATGGGA
GTGTTGTATGTGTATCTCAGGTTTTGAGTGGTGTGTGTGCATGTGTATTG
AAGCTTACACACATGTGTGTGAGGCATTGCATATATGTAATTGTATGTGC
ATAAGTCCTTGTATGTTTATGTTGCTGCTTGTGCATATGGTATGTGTGTG
TGGATAATTGCCAGTGTTTTTTTTTTGCAGCGAGCGAGCAGGCTTCTGTG
GCTGGGATGACTACCCCCCCCCCCTATATGTGTCACTGGCCCAGTTCAGG
GATGAAATGTCAGAGGTTAGGGGCTCTCCAGCACAGGTCATTTCTCAGGT
CCTGGTCAGTGCTCCCAGGATCTCCTACCCTTCACGAACTAAGTCAGGCT
GCAATTAATCCACCTGATCTCCCCGAACAACCCAAAGTATAATTAGGTTC
TCCCTTTTGCAAGTCTCCTCTACTAATTGTCCCGTTACCCATTTTGTCTT
TATAACCAACGCGTCTTGCCTCCCCTTTTCAATTATGTAAATCAACGCCC
CTTACTTTTTTTTTTTGTTAGACGTATTCACCACCTTTTATTTTCCTTCT
CACCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_o09.g1 MSMg01no121_o09.g1 CHROMAT_FILE:
MSMg01no121_o09.g1 PHD_FILE: MSMg01no121_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:50 2005
         (240 letters)



>mm_chr11_72321324_72321964
          Length = 641

 Score =  391 bits (202), Expect = e-113
 Identities = 231/241 (95%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagctagna-cacacgtcttttgatattttatgtatctcctctgttgccttcatatgtat 59
           ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctagtaccacacgtctttcgatattttatgtatctcctctgttgccttcatatgtat 382

                                                                       
Query: 60  atacatgtggtatgggagtgttgtatgtgtatctcaggttttgagtggtgtgtgtgcatg 119
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacatgtgatatgggagtgatgtatgtgtatctcaggttttgagtggtgtgtgtgcatg 322

                                                                       
Query: 120 tgtattgaagcttacacacatgtgtgtgaggcattgcatatatgtaattgtatgtgcata 179
           |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgtattgaagcttatatacatgtgtgtgaggcattgcatatatgtaattgtatgtgcaga 262

                                                                       
Query: 180 agtccttgtatgtttatgttgctgcttgtgcatatggtatgtgtgtgtggataattgcca 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agtccttgtatgtttatgttgttgcttgtgcatatggtatgtgtgtgtgtataattgcca 202

            
Query: 240 g 240
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)