BAC Information

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BAC

Clone NameMSMg01-122B10
Chromosome11 (Build37)
Map Location 50,210,108 - 50,210,787
singlet/doubletsinglet
Overlap geneRufy1
Upstream geneLOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122B10.T7 (MSMg01no122_b10.b1)MSMg01-122B10.TJ (MSMg01no122_b10.g1)
ACCAG332039AG332040
length1,1791,228
length of high quality
(start - end)		680 (90 - 769)663 (90 - 752)
definitionCHROMAT_FILE: MSMg01no122_b10.b1 PHD_FILE: MSMg01no122_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:10 2005CHROMAT_FILE: MSMg01no122_b10.g1 PHD_FILE: MSMg01no122_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTACTTNNNNAGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTCTTCACTAAAGCCATTAAACCCTGGATTTGTCTATG
TCAAGGTCTCTAAAAGACCATGGGGCTGCACGCACACCAGGTGGAAGAAG
GCAGATCTCTGTGAGTTCAAATCCAGTTTGCTCTACATATCAAGTTGCTC
ACCAGCAAGGGCAACACAGTGAGACCTTGTCTTAAAATGAAAAAGTTAGC
GTGACCATGGGGACCGTGAGTGTGTCTGCCCCTTCACTGACGGCATCATC
AAGTCTGTGGTTATGTGTACAATTCAAGTGCAGACTGAAGGTTTTTGAGG
TGGGTATGTTCAATGACAGAGACACTTTCTAGGTCCTTTCATGTGCAGTT
TCCTCCCATCTGCTCTCTGGGGCTGGCCTGGCTCGAGCCCCTTCCTTCCC
TTTGTCCAGGCGGGGTCTGGGTCTGGAAGCCTGATGCTCAGGATGCCTGG
AGGTATCCAGGAAACCAGTCCAGCAGACTGCAATCAGCCGAGTTTCCTAA
GAGGTCTGCTCCGACTACAAGAATGTCACTAGGTCAACACTCCACTCATG
CTCACAGGATCCAGGACATTCCTGAAAGTGACACTGGGGACTCCAGAGGA
CTGACCCATGCCAGAAGGGGATGGAACACAGGATGACTATGGGGTCTGGT
TCTGTCTGCATCCTGGGATGACTTGAGCTTTGGGAAAAATGGCTCACTAA
CTTCTGGGGAGAAGGTCATGTGCGCAGGCTTTTGCTGAAAATGCTGACTT
GTCCTGCACCAGCTCTTCCATACAGCAGCCGATCCTAAGCCCAGCTGCGA
GCACCGCCTGCTTCCTTGGTAACTGGCGTGTCCCTCCCCGAGGCCTCCTG
CTTCCTATCTGCTATTCTCAGCCTTCCCTCTCCTCTGCCTTTATTCTCAC
TCTCTCAAGCTTACCACTTGCTCCCTTGGTTCACTCGCCCCTTTAAGACA
GAACTCTCTTGTTGGGGTAAAAACACTGCCCCCTGGCCCCTGTTTCCCCC
ATCTGTAGTTCTGGAAAGGGGACTTGGCCCTTTTGGGGTAGGGTCCCTGT
AAACATGTCCCTATCGCCTTTAATATCTCTACTTTGTTTGGACCATAAAG
ATAAGCCTCTATATCTTTCTTCTAAGGGC

AGTATTCTTTNNAACCATGTGTAGCTGGGGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATTTGGCTGGCCTTGAAGTC
ACAGAGGCAGATCTGCCTGTCTCTGCCTCTCAAGTGCTGGGATTATAGAC
CTATGCCACTGTGCCCAATGATTCTTCTTCTGACTAACCCAAAGTTCAGT
GATTGGAGGCATTAATGAAATTTGCAAAATCTTCTGGCATACAACAGCTA
ATAATCACAGAAGTGATCTCCTTTCCAGGAAAGGGGATTTGTCTGTGTGT
CTTATTAATTCTTCATGGTCAACTTGACTGTATTTCGAATTATGACAGAA
TCACACCTTGAGAGTGTCTATGGAGTTTGCACAAATGTCTAACTGAAGAA
GGAAAACCCCTTGAGAACCCCGCTGTTGGTGAGTGCAGAGGTCTAGAACA
GATTATGAAGGGGGAAGGAAGTGAGCTGTGCTCCAGCGTTCATCTCTCTC
TGCTTCCTGGATGTAGTAGCAACAGGAGCAGCCACTTCACACTCCTGCTC
CAGGCCATCCCTGTCACGATGGACAGCTCCCTCGAGCCATCAGCTGAAAC
ACCCACCCTCCCTTCTGCAGGCATATATTTTCACAACCTACTTTAATAAG
AGTTCAAGTTTCCCTCCTGCCCACCACCCACCAGTGGTAGTGGAAGTATA
TGGGGGAAGTAGACCTGCTTAGAAATAGTTCTTTGGGGGTGATTCCAGTC
TTTCATTTGTCAGGATATCAGTTCTACTAGCAAACCACCAAACATGAATT
GCCAGCTGCAGACCAGTCCATTCGGTAGACACCACGTACGAATCAGCAAA
GGCAGTTCAATCCAAAAGTCCATGTAAGTGGCGATAAGCTTGCGGAACCT
CTCGAGAAGTTCTTTGGTAAATTCCTCCCTATGAAGTCCCCCATGATGAA
ATCTCACCAATGCAATGTAAAGCTTAACCATTACGTGCATTGTCATCAGG
GAAACAATCACCACCGTATAACCTCAACTAAACCAATGTTTCTCACCTTC
CCACTTGTCCGTGGGGGGACCAAATTTTAAAATTCCTTTCCTGAACATCC
CAGGTGGACCCTTTTCCCCATTGGTTTGCCAAATATCNAACCACATTCTT
TTTTTTCCTGTGGTGTCCTGCTCTTCCACAAAAAAAATACCCTCTTCCCC
TTGTTGAGCCTCCTCTCTCATCAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_b10.b1 MSMg01no122_b10.b1 CHROMAT_FILE:
MSMg01no122_b10.b1 PHD_FILE: MSMg01no122_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:10 2005
         (680 letters)



>mm_chr11_50209908_50210987
          Length = 1080

 Score = 1261 bits (652), Expect = 0.0
 Identities = 673/680 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtctatgtcaaggtctctaaaagaccatggggctgcacgcacaccaggtggaagaa 60
           ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 201 atttgtctatgtcaaggtctctaaaagatgaaggggctgcacgcacaccaggtggaagaa 260

                                                                       
Query: 61  ggcagatctctgtgagttcaaatccagtttgctctacatatcaagttgctcaccagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagatctctgtgagttcaaatccagtttgctctacatatcaagttgctcaccagcaag 320

                                                                       
Query: 121 ggcaacacagtgagaccttgtcttaaaatgaaaaagttagcgtgaccatggggaccgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ggcaacacagtgagaccttgtcttaaaatgaaaaagttagcgtgaccgtggggaccgtga 380

                                                                       
Query: 181 gtgtgtctgccccttcactgacggcatcatcaagtctgtggttatgtgtacaattcaagt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gtgtgtctgccccttcactgacggcatcatcaagtctgcggttatgtgtacaattcaagt 440

                                                                       
Query: 241 gcagactgaaggtttttgaggtgggtatgttcaatgacagagacactttctaggtccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagactgaaggtttttgaggtgggtatgttcaatgacagagacactttctaggtccttt 500

                                                                       
Query: 301 catgtgcagtttcctcccatctgctctctggggctggcctggctcgagccccttccttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtgcagtttcctcccatctgctctctggggctggcctggctcgagccccttccttcc 560

                                                                       
Query: 361 ctttgtccaggcggggtctgggtctggaagcctgatgctcaggatgcctggaggtatcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgtccaggcggggtctgggtctggaagcctgatgctcaggatgcctggaggtatcca 620

                                                                       
Query: 421 ggaaaccagtccagcagactgcaatcagccgagtttcctaagaggtctgctccgactaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaaccagtccagcagactgcaatcagccgagtttcctaagaggtctgctccgactaca 680

                                                                       
Query: 481 agaatgtcactaggtcaacactccactcatgctcacaggatccaggacattcctgaaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatgtcactaggtcaacactccactcatgctcacaggatccaggacattcctgaaagt 740

                                                                       
Query: 541 gacactggggactccagaggactgacccatgccagaaggggatggaacacaggatgacta 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 gacactggggactccagaggactgacccatgccagaaggggatggaacacgggatgacta 800

                                                                       
Query: 601 tggggtctggttctgtctgcatcctgggatgacttgagctttgggaaaaatggctcacta 660
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggggtctggctctgtctgcatcctgggatgacttgagctttgggaaaaatggctcacta 860

                               
Query: 661 acttctggggagaaggtcat 680
           ||||||||||||||||||||
Sbjct: 861 acttctggggagaaggtcat 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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